RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA675638", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA675638 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12127864 12127864 PRJNA675638_P_NODE_5270_length_295_cov_1.597561_g5073_i0 PRJNA675638 5270 295 1.597561 4.71280495 Campylobacter avium 522485 Bacteria Bacteria 56.5 0.002   NTclustered gi|1226875038|gb|CP022347.1| 522484 g5073 i0 100 0.101694915254237 30 0 10 0 163 192 1677057 1677086 Campylobacter avium LMG 24591 chromosome, complete genome blastn 30 56.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter avium
30176635 30176635 PRJNA675638_P_NODE_14952_length_185_cov_2.308824_g14755_i0 PRJNA675638 14952 185 2.308824 4.2713244 Helicobacter jaachi 1677920 Bacteria Bacteria 41.6 0.0422   NR WP_034354477.1 1677920 g14755 i0 41.2 0.827027027027027 51 26 82.7 2 19 171 154 200 WP_034354477.1 fumarate reductase cytochrome b subunit [Helicobacter jaachi] diamond 153 41.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter jaachi
32010212 32010212 PRJNA675638_S_NODE_9278_length_161_cov_0.910714_g9216_i0 PRJNA675638 9278 161 0.910714 1.46624954 Campylobacter fetus 196 Bacteria Bacteria 47 3.3e-4   NR WP_191095190.1 196 g9216 i0 58.6 1.6583850931677 29 12 54 0 75 161 3 31 WP_191095190.1 hypothetical protein [Campylobacter fetus] diamond 267 47 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;