RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA675638", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA675638 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27081947 27081947 PRJNA675638_P_NODE_16802_length_175_cov_1.142857_g16605_i0 PRJNA675638 16802 175 1.142857 1.99999975 Planctomycetota bacterium 2026780 Bacteria Bacteria 43.1 0.0106   NR HYE97375.1 2026780 g16605 i0 44.7 0.805714285714286 47 25 78.9 1 3 140 115 161 HYE97375.1 alginate export family protein [Planctomycetota bacterium] diamond 141 43.1 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
27081951 27081951 PRJNA675638_S_NODE_9342_length_161_cov_0.910714_g9280_i0 PRJNA675638 9342 161 0.910714 1.46624954 Pirellulaceae bacterium 2699754 Bacteria Bacteria 50.1 1.59e-5   NR MFN9913902.1 2699754 g9280 i0 65.7 0.652173913043478 35 12 65.2 0 7 111 143 177 MFN9913902.1 hypothetical protein [Pirellulaceae bacterium] diamond 105 50.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae   Pirellulaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;