RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA675331" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA675331 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29197873 29197873 PRJNA675331_P_NODE_9429_length_322_cov_1.542169_g9257_i0 PRJNA675331 9429 322 1.542169 4.96578418 Spirochaetales bacterium 2026792 Bacteria Bacteria 44.3 0.0234   NR MFQ3620266.1 2026792 g9257 i0 46.7 0.419254658385093 45 24 41.9 0 177 311 28 72 MFQ3620266.1 CBS domain-containing protein [Spirochaetales bacterium] diamond 135 44.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium
30188411 30188411 PRJNA675331_P_NODE_9252_length_325_cov_1.150794_g9080_i0 PRJNA675331 9252 325 1.150794 3.7400805 Treponema 157 Bacteria Bacteria 127 3.56e-32   NR MCR4789916.1 2854022 g9080 i0 60.6 10.56 104 41 96 0 12 323 43 146 MCR4789916.1 diaminobutyrate--2-oxoglutarate transaminase family protein [Treponemataceae bacterium] diamond 3432 128 0.9921875 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae   Treponemataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;