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contig_metadata

19 rows where bioproject = "PRJNA675331" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA675331 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3720209 3720209 PRJNA675331_P_NODE_16723_length_260_cov_1.010695_g16551_i0 PRJNA675331 16723 260 1.010695 2.627807 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 209 1.33e-49   NTclustered gi|675118790|gb|KJ877261.1| 1538727 g16551 i0 82.061 58.9807692307692 262 32 100 10 1 260 1244 996 Paroigolaimella stresemanni 28S ribosomal RNA gene, partial sequence blastn 15335 209 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Paroigolaimella Paroigolaimella stresemanni
4475720 4475720 PRJNA675331_P_NODE_14324_length_275_cov_1.143564_g14152_i0 PRJNA675331 14324 275 1.143564 3.144801 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 159 3.59e-46   NR VDK83348.1 42156 g14152 i0 82 20.3890909090909 89 16 97.1 0 8 274 90 178 VDK83348.1 unnamed protein product [Litomosoides sigmodontis] diamond 5607 159 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Litomosoides Litomosoides sigmodontis
11372085 11372085 PRJNA675331_P_NODE_3449_length_504_cov_1.250580_g3279_i0 PRJNA675331 3449 504 1.25058 6.3029232 Caenorhabditis 6237 Nematoda Nematoda 54.7 0.014   NTclustered gi|2158436942|ref|XM_002645332.2| 6238 g3279 i0 100 0.337301587301587 29 0 6 0 71 99 67 39 Caenorhabditis briggsae Protein CBR-UNC-27 (Cbr-unc-27), partial mRNA blastn 170 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
11372091 11372091 PRJNA675331_P_NODE_6309_length_384_cov_0.990354_g6137_i0 PRJNA675331 6309 384 0.990354 3.80295936 Pristionchus 54125 Nematoda Nematoda 187 9.629999999999999e-43   NTclustered gi|150982135|gb|EF634656.1| 376547 g6137 i0 82.273 38.3880208333333 220 35 57 4 145 362 221 4 Pristionchus pseudaerivorus large subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 14741 187 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pseudaerivorus
12127120 12127120 PRJNA675331_P_NODE_8510_length_336_cov_1.912548_g8338_i0 PRJNA675331 8510 336 1.912548 6.42616128 Rhabditida 6236 Nematoda Nematoda 190 2.38e-53   NR VBB30983.1 6277 g8338 i0 79.3 21.8035714285714 111 23 99.1 0 336 4 735 845 VBB30983.1 unnamed protein product [Acanthocheilonema viteae] diamond 7326 190 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
13401866 13401866 PRJNA675331_P_NODE_4231_length_460_cov_1.459948_g4059_i0 PRJNA675331 4231 460 1.459948 6.7157608 Caenorhabditis elegans 6239 Nematoda Nematoda 171 1.18e-37   NTclustered gi|156481|gb|M23433.1|CELUBIA 6239 g4059 i0 88.652 60.8065217391304 141 14 30 2 321 460 1602 1463 C.elegans polyubiquitin (UbiA) gene, complete cds blastn 27971 171 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17225860 17225860 PRJNA675331_P_NODE_9354_length_323_cov_1.616000_g9182_i0 PRJNA675331 9354 323 1.616 5.21968 Caenorhabditis elegans 6239 Nematoda Nematoda 75 6.47e-9   NTclustered gi|13489244|gb|AY008140.1| 6239 g9182 i0 92.308 0.804953560371517 52 4 16 0 271 322 1041 990 Caenorhabditis elegans isolate GOA-1 heterotrimeric G protein alpha subunit mRNA, complete cds blastn 260 75 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24873895 24873895 PRJNA675331_P_NODE_20060_length_248_cov_0.880000_g19888_i0 PRJNA675331 20060 248 0.88 2.1824 Brugia malayi 6279 Nematoda Nematoda 54.7 0.006   NTclustered gi|2082277598|ref|XM_001900924.2| 6279 g19888 i0 92.5 0.161290322580645 40 0 16 3 62 100 956 919 Brugia malayi uncharacterized protein (Bma-atf-7), partial mRNA blastn 40 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
27093688 27093688 PRJNA675331_P_NODE_19502_length_249_cov_0.875000_g19330_i0 PRJNA675331 19502 249 0.875 2.17875 root 1 Root_unresolved Root_unresolved 52.4 1.32e-5   NR KAH7701131.1 70226 g19330 i0 43.9 8.57831325301205 66 36 78.3 1 10 204 146 211 KAH7701131.1 ARD-1 protein [Aphelenchoides avenae] diamond 2136 52.8 0.992424242424242 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
27630983 27630983 PRJNA675331_P_NODE_7284_length_360_cov_1.073171_g7112_i0 PRJNA675331 7284 360 1.073171 3.8634156 Enoplea 119088 Nematoda Nematoda 72.8 1.13e-12   NR KAL1242974.1 6334 g7112 i0 46.6 4.225 73 37 60.8 1 224 6 2 72 KAL1242974.1 Proliferating cell nuclear antigen [Trichinella spiralis] diamond 1521 73.2 0.994535519125683 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
28136154 28136154 PRJNA675331_P_NODE_5445_length_410_cov_1.370920_g5273_i0 PRJNA675331 5445 410 1.37092 5.620772 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 109 1.23e-24   NR GMT31172.1 1538716 g5273 i0 40.9 3.78292682926829 127 73 92.9 2 389 9 835 959 GMT31172.1 hypothetical protein PFISCL1PPCAC_22469, partial [Pristionchus fissidentatus] diamond 1551 110 0.990909090909091 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
29892560 29892560 PRJNA675331_P_NODE_16691_length_260_cov_1.235294_g16519_i0 PRJNA675331 16691 260 1.235294 3.2117644 Ditylenchus destructor 166010 Nematoda Nematoda 68.2 5.31e-11   NR KAI1720497.1 166010 g16519 i0 41.8 5.59615384615385 79 44 91.2 2 245 9 93 169 KAI1720497.1 spectrin repeat domain-containing protein [Ditylenchus destructor] diamond 1455 68.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
30030631 30030631 PRJNA675331_P_NODE_3551_length_497_cov_2.207547_g3380_i0 PRJNA675331 3551 497 2.207547 10.97150859 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.5 0.00232   NR KRZ89358.1 92180 g3380 i0 63.2 0.682092555331992 38 11 22.9 2 486 373 10 44 KRZ89358.1 DNA-binding protein HEXBP [Trichinella sp. T8] diamond 339 48.9 0.991820040899796 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella sp. T8
30315397 30315397 PRJNA675331_P_NODE_7932_length_347_cov_1.124088_g7760_i0 PRJNA675331 7932 347 1.124088 3.90058536 Opisthokonta 33154 Nematoda Nematoda 103 7.879999999999999e-23   NR KAF7637327.1 189291 g7760 i0 47.9 7.13256484149856 117 59 99.4 1 2 346 505 621 KAF7637327.1 Chloride channel protein [Meloidogyne graminicola] diamond 2475 104 0.990384615384615 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
31472571 31472571 PRJNA675331_P_NODE_6576_length_377_cov_1.259868_g6404_i0 PRJNA675331 6576 377 1.259868 4.74970236 Nippostrongylus brasiliensis 27835 Nematoda Nematoda 208 2.57e-61   NR WKX92882.1 27835 g6404 i0 77.6 19.8541114058355 125 28 99.5 0 3 377 260 384 WKX92882.1 hypothetical protein Q1695_010705 [Nippostrongylus brasiliensis] diamond 7485 208 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Nippostrongylus Nippostrongylus brasiliensis
31484465 31484465 PRJNA675331_P_NODE_8696_length_333_cov_1.480769_g8524_i0 PRJNA675331 8696 333 1.480769 4.93096077 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 81.3 3.22e-15   NR CAD5234943.1 6326 g8524 i0 35.6 7.04504504504505 104 66 92.8 1 331 23 102 205 CAD5234943.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 2346 81.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
31599102 31599102 PRJNA675331_P_NODE_13476_length_279_cov_1.432039_g13304_i0 PRJNA675331 13476 279 1.432039 3.99538881 Angiostrongylus costaricensis 334426 Nematoda Nematoda 84.7 8.12e-17   NR VDM53726.1 334426 g13304 i0 46.2 6.88172043010753 91 49 97.8 0 7 279 57 147 VDM53726.1 unnamed protein product [Angiostrongylus costaricensis] diamond 1920 84.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus costaricensis
32053571 32053571 PRJNA675331_P_NODE_4718_length_438_cov_1.739726_g4546_i0 PRJNA675331 4718 438 1.739726 7.61999988 Metazoa 33208 Nematoda Nematoda 127 1.8199999999999999e-34   NR KAF8386747.1 54126 g4546 i0 64 7.02054794520548 111 37 74.7 2 328 2 12 121 KAF8386747.1 rpl-25.1 [Pristionchus pacificus] diamond 3075 127 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
32737226 32737226 PRJNA675331_P_NODE_18620_length_250_cov_0.870056_g18448_i0 PRJNA675331 18620 250 0.870056 2.17514 Trichuris suis 68888 Nematoda Nematoda 44.3 0.011   NR KFD57359.1 68888 g18448 i0 35.4 1.968 82 49 93.6 2 4 237 131 212 KFD57359.1 hypothetical protein M513_01870 [Trichuris suis] diamond 492 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;