RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA675331" and tax_phylum = "Negarnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA675331 · 10 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1168554 1168554 PRJNA675331_P_NODE_2021_length_644_cov_1.509632_g1855_i0 PRJNA675331 2021 644 1.509632 9.72203008 Paramyxoviridae 11158 Viruses Viruses 1173 0   NTclustered gi|9998888|emb|AJ278916.1| 251774 g1855 i0 99.534 97.9673913043478 644 3 100 0 1 644 267 910 Porcine parainfluenza virus mRNA for fusion protein (f gene) blastn 63091 1184 0.990709459459459 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Rubulavirus Porcine parainfluenza virus
2443874 2443874 PRJNA675331_P_NODE_1802_length_681_cov_1.687500_g1641_i0 PRJNA675331 1802 681 1.6875 11.491875 Orthorubulavirus 2560195 Viruses Viruses 1247 0   NTclustered gi|146351838|gb|EF543648.1| 149595 g1641 i0 99.706 70.5565345080764 681 2 100 0 1 681 1348 668 Canine parainfluenza virus strain FA nucleocapsid (N) gene, complete cds blastn 48049 1253 0.995211492418196 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae   Canine parainfluenza virus
6272474 6272474 PRJNA675331_P_NODE_2205_length_618_cov_1.743119_g2039_i0 PRJNA675331 2205 618 1.743119 10.77247542 Paramyxoviridae 11158 Viruses Viruses 1114 0   NTclustered gi|2721617856|gb|PP711545.1| 251774 g2039 i0 99.191 96.9983818770227 618 5 100 0 1 618 4981 4364 Porcine parainfluenza virus isolate PPIV-DX-Gansu-2020, partial genome blastn 59945 1120 0.994642857142857 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Rubulavirus Porcine parainfluenza virus
6272476 6272476 PRJNA675331_P_NODE_2245_length_613_cov_2.361111_g2079_i0 PRJNA675331 2245 613 2.361111 14.47361043 Paramyxoviridae 11158 Viruses Viruses 1133 0   NTclustered gi|2721617856|gb|PP711545.1| 251774 g2079 i0 100 68.9967373572594 613 0 100 0 1 613 2151 2763 Porcine parainfluenza virus isolate PPIV-DX-Gansu-2020, partial genome blastn 42295 1133 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Rubulavirus Porcine parainfluenza virus
7546426 7546426 PRJNA675331_P_NODE_20026_length_248_cov_0.880000_g19854_i0 PRJNA675331 20026 248 0.88 2.1824 Paramyxoviridae 11158 Viruses Viruses 455 1.4600000000000002e-123   NTclustered gi|2721617856|gb|PP711545.1| 251774 g19854 i0 100 69.1209677419355 246 0 99 0 3 248 8311 8556 Porcine parainfluenza virus isolate PPIV-DX-Gansu-2020, partial genome blastn 17142 455 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Rubulavirus Porcine parainfluenza virus
7546435 7546435 PRJNA675331_P_NODE_6086_length_390_cov_0.798107_g5914_i0 PRJNA675331 6086 390 0.798107 3.1126173 Paramyxoviridae 11158 Viruses Viruses 699 0   NTclustered gi|2721617856|gb|PP711545.1| 251774 g5914 i0 98.974 82.9641025641026 390 4 100 0 1 390 7112 6723 Porcine parainfluenza virus isolate PPIV-DX-Gansu-2020, partial genome blastn 32356 704 0.992897727272727 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Rubulavirus Porcine parainfluenza virus
8821564 8821564 PRJNA675331_P_NODE_887_length_946_cov_1.633448_g755_i0 PRJNA675331 887 946 1.633448 15.45241808 Paramyxoviridae 11158 Viruses Viruses 1698 0   NTclustered gi|2721617856|gb|PP711545.1| 251774 g755 i0 99.049 84.9778012684989 946 9 100 0 1 946 769 1714 Porcine parainfluenza virus isolate PPIV-DX-Gansu-2020, partial genome blastn 80389 1698 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Rubulavirus Porcine parainfluenza virus
11372076 11372076 PRJNA675331_P_NODE_15689_length_267_cov_1.190722_g15517_i0 PRJNA675331 15689 267 1.190722 3.17922774 Paramyxoviridae 11158 Viruses Viruses 494 3.38e-135   NTclustered gi|2721617856|gb|PP711545.1| 251774 g15517 i0 100 83.9438202247191 267 0 100 0 1 267 6537 6271 Porcine parainfluenza virus isolate PPIV-DX-Gansu-2020, partial genome blastn 22413 494 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Rubulavirus Porcine parainfluenza virus
13922450 13922450 PRJNA675331_P_NODE_7931_length_347_cov_1.124088_g7759_i0 PRJNA675331 7931 347 1.124088 3.90058536 Paramyxoviridae 11158 Viruses Viruses 625 1.5399999999999999e-174   NTclustered gi|146351836|gb|EF543647.1| 149595 g7759 i0 99.135 80.6599423631124 347 3 100 0 1 347 447 101 Canine parainfluenza virus strain FA hemagglutin-neuraminidase (HN) gene, complete cds blastn 27989 630 0.992063492063492 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae   Canine parainfluenza virus
17746391 17746391 PRJNA675331_P_NODE_2094_length_634_cov_1.290553_g1928_i0 PRJNA675331 2094 634 1.290553 8.18210602 Orthorubulavirus 2560195 Viruses Viruses 1155 0   NTclustered gi|2449300967|gb|ON241249.1| 2560580 g1928 i0 99.527 85.1514195583596 634 3 100 0 1 634 695 62 Mammalian orthorubulavirus 5 isolate ATCC HTB-55 batch no 70037771, complete genome blastn 53986 1155 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthorubulavirus Orthorubulavirus mammalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;