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contig_metadata

31 rows where bioproject = "PRJNA675331" and tax_phylum = "Actinomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 31 ✖

tax_kingdom 1

bioproject 1

  • PRJNA675331 · 31 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1168559 1168559 PRJNA675331_P_NODE_4981_length_427_cov_3.491525_g4809_i0 PRJNA675331 4981 427 3.491525 14.90881175 Cutibacterium 1912216 Bacteria Bacteria 789 0   NTclustered gi|2548746222|gb|CP129004.1| 1747 g4809 i0 100 274.700234192037 427 0 100 0 1 427 608341 608767 Cutibacterium acnes strain EASDk81B chromosome, complete genome blastn 117297 789 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
1923886 1923886 PRJNA675331_P_NODE_23502_length_242_cov_0.911243_g23330_i0 PRJNA675331 23502 242 0.911243 2.20520806 Rhodococcoides fascians 1828 Bacteria Bacteria 448 2.3799999999999995e-121   NTclustered gi|2637134465|gb|CP140264.1| 1828 g23330 i0 100 10.7438016528926 242 0 100 0 1 242 3708891 3708650 Rhodococcoides fascians strain GS01 chromosome, complete genome blastn 2600 448 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcoides Rhodococcoides fascians
3198667 3198667 PRJNA675331_P_NODE_20943_length_246_cov_0.890173_g20771_i0 PRJNA675331 20943 246 0.890173 2.18982558 Aeromicrobium chenweiae 2079793 Bacteria Bacteria 58.4 4.78e-4   NTclustered gi|1380481754|gb|CP026952.1| 2079793 g20771 i0 90.909 0.178861788617886 44 3 18 1 52 95 2854818 2854776 Aeromicrobium chenweiae strain 592 chromosome, complete genome blastn 44 58.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium chenweiae
4475818 4475818 PRJNA675331_P_NODE_9544_length_320_cov_13.870445_g9372_i0 PRJNA675331 9544 320 13.870445 44.385424 Bifidobacterium sp. group II-3 152172 Bacteria Bacteria 488 1.93e-133   NTclustered gi|12958602|gb|AF321296.1| 152172 g9372 i0 95.987 75.1625 299 6 93 1 12 310 481 773 Bifidobacterium sp. group II-3 16S ribosomal RNA gene, partial sequence blastn 24052 488 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium sp. group II-3
4996866 4996866 PRJNA675331_P_NODE_20004_length_248_cov_0.880000_g19832_i0 PRJNA675331 20004 248 0.88 2.1824 Streptomyces 1883 Bacteria Bacteria 52.8 0.022   NTclustered gi|1992354418|gb|CP070326.1| 1971 g19832 i0 100 0.225806451612903 28 0 11 0 105 132 1174518 1174491 Streptomyces noursei strain A-2-1 chromosome, complete genome blastn 56 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces noursei
4996873 4996873 PRJNA675331_P_NODE_3464_length_503_cov_2.093023_g3293_i0 PRJNA675331 3464 503 2.093023 10.52790569 Actinomycetes 1760 Bacteria Bacteria 62.1 8.17e-5   NTclustered gi|2655716716|gb|CP108864.1| 1961 g3293 i0 97.222 1.09145129224652 36 1 7 0 339 374 6725921 6725956 Streptomyces virginiae strain NBC_00831 chromosome, complete genome blastn 549 62.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces virginiae
8821557 8821557 PRJNA675331_P_NODE_23427_length_242_cov_0.911243_g23255_i0 PRJNA675331 23427 242 0.911243 2.20520806 Kocuria 57493 Bacteria Bacteria 448 2.3799999999999995e-121   NTclustered gi|2654448039|gb|CP108528.1| 72000 g23255 i0 100 108 242 0 100 0 1 242 1091961 1091720 Kocuria rhizophila strain NBC_01227 chromosome, complete genome blastn 26136 448 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria rhizophila
8821558 8821558 PRJNA675331_P_NODE_2367_length_601_cov_1.795455_g2201_i0 PRJNA675331 2367 601 1.795455 10.79068455 Cutibacterium 1912216 Bacteria Bacteria 1110 0   NTclustered gi|1446500593|gb|CP031442.1| 1747 g2201 i0 100 289.404326123128 601 0 100 0 1 601 55518 56118 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 173932 1110 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
9576340 9576340 PRJNA675331_P_NODE_22348_length_244_cov_0.900585_g22176_i0 PRJNA675331 22348 244 0.900585 2.1974274 Janibacter indicus 857417 Bacteria Bacteria 446 8.639999999999999e-121   NTclustered gi|1110981648|gb|CP013290.1| 857417 g22176 i0 99.59 4.20081967213115 244 1 100 0 1 244 745155 744912 Janibacter indicus strain YFY001 chromosome, complete genome blastn 1025 446 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Janibacter Janibacter indicus
9576341 9576341 PRJNA675331_P_NODE_22628_length_243_cov_0.905882_g22456_i0 PRJNA675331 22628 243 0.905882 2.20129326 uncultured Actinomycetes bacterium 152507 Bacteria Bacteria 52.8 0.022   NTclustered gi|2874254008|emb|OY970333.1| 152507 g22456 i0 100 0.11522633744856 28 0 12 0 11 38 714861 714888 MAG: uncultured Actinomycetes bacterium isolate MFD05747.bin.c.3 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes       uncultured Actinomycetes bacterium
9576343 9576343 PRJNA675331_P_NODE_23008_length_243_cov_0.905882_g22836_i0 PRJNA675331 23008 243 0.905882 2.20129326 Corynebacterium haemomassiliense 2754726 Bacteria Bacteria 449 6.65e-122   NTclustered gi|2831275068|gb|CP170998.1| 2754726 g22836 i0 100 1 243 0 100 0 1 243 2234104 2233862 Corynebacterium haemomassiliense strain WGS1525 chromosome, complete genome blastn 243 449 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium haemomassiliense
10097218 10097218 PRJNA675331_P_NODE_9628_length_319_cov_10.231707_g9456_i0 PRJNA675331 9628 319 10.231707 32.63914533 root 1 Root_unresolved Root_unresolved 488 1.9199999999999997e-133   NTclustered gi|572927228|gb|KF733677.1| 1660 g9456 i0 95.973 94.717868338558 298 7 93 1 12 309 488 780 Schaalia odontolytica strain ChDC B351 16S ribosomal RNA gene, partial sequence blastn 30215 488 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia odontolytica
13401863 13401863 PRJNA675331_P_NODE_3451_length_504_cov_1.245940_g3281_i0 PRJNA675331 3451 504 1.24594 6.2795376 Mycobacterium sp. AMU20-3851 3122055 Bacteria Bacteria 97.1 2.24e-15   NTclustered gi|2841713191|gb|CP146371.1| 3122055 g3281 i0 77.841 0.694444444444444 176 26 33 7 228 395 3681568 3681398 Mycobacterium sp. AMU20-3851 chromosome, complete genome blastn 350 97.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. AMU20-3851
13922423 13922423 PRJNA675331_P_NODE_12211_length_290_cov_1.493088_g12039_i0 PRJNA675331 12211 290 1.493088 4.3299552 Brevibacterium 1696 Bacteria Bacteria 58.4 5.77e-4   NTclustered gi|2161746310|gb|CP088298.1| 2898795 g12039 i0 100 0.213793103448276 31 0 11 0 98 128 1165781 1165751 Brevibacterium zhoupengii strain HY170 chromosome, complete genome blastn 62 58.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium zhoupengii
15950471 15950471 PRJNA675331_P_NODE_14553_length_274_cov_1.094527_g14381_i0 PRJNA675331 14553 274 1.094527 2.99900398 Actinacidiphila bryophytorum 1436133 Bacteria Bacteria 56.5 0.002   NTclustered gi|2294970197|gb|CP103871.1| 1436133 g14381 i0 100 0.529197080291971 30 0 11 0 125 154 3041567 3041596 Actinacidiphila bryophytorum strain DS3 chromosome, complete genome blastn 145 56.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Actinacidiphila Actinacidiphila bryophytorum
15950500 15950500 PRJNA675331_P_NODE_20013_length_248_cov_0.880000_g19841_i0 PRJNA675331 20013 248 0.88 2.1824 Cutibacterium modestum 2559073 Bacteria Bacteria 459 1.13e-124   NTclustered gi|1061027374|gb|CP017040.1| 2559073 g19841 i0 100 2 248 0 100 0 1 248 1428294 1428047 Cutibacterium modestum strain F0672, complete sequence blastn 496 459 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium modestum
17746401 17746401 PRJNA675331_P_NODE_9434_length_322_cov_1.353414_g9262_i0 PRJNA675331 9434 322 1.353414 4.35799308 Corynebacterium 1716 Bacteria Bacteria 579 1.1199999999999997e-160   NTclustered gi|1980274752|gb|CP068291.1| 38290 g9262 i0 99.068 391.44099378882 322 3 100 0 1 322 1315330 1315651 Corynebacterium macginleyi strain 180208 chromosome, complete genome blastn 126044 584 0.991438356164384 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium macginleyi
21050303 21050303 PRJNA675331_P_NODE_23237_length_242_cov_1.047337_g23065_i0 PRJNA675331 23237 242 1.047337 2.53455554 Corynebacterium kefirresidentii 1979527 Bacteria Bacteria 442 1.1099999999999995e-119   NTclustered gi|2869824480|gb|CP175781.1| 1979527 g23065 i0 99.587 357.00826446281 242 1 100 0 1 242 191862 191621 Corynebacterium kefirresidentii strain YSMAA1_2_G9 chromosome, complete genome blastn 86396 442 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium kefirresidentii
22325141 22325141 PRJNA675331_P_NODE_18758_length_250_cov_0.870056_g18586_i0 PRJNA675331 18758 250 0.870056 2.17514 Corynebacterium tuberculostearicum 38304 Bacteria Bacteria 455 1.48e-123   NTclustered gi|2869804070|gb|CP175770.1| 38304 g18586 i0 99.598 26.788 249 1 99 0 1 249 901307 901555 Corynebacterium tuberculostearicum strain YSMAA5_1_B12 chromosome, complete genome blastn 6697 455 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum
24120481 24120481 PRJNA675331_P_NODE_2439_length_593_cov_1.015385_g2273_i0 PRJNA675331 2439 593 1.015385 6.02123305 Cutibacterium 1912216 Bacteria Bacteria 957 0   NTclustered gi|1446500593|gb|CP031442.1| 1747 g2273 i0 95.939 280.4586846543 591 23 99 1 1 590 56683 56093 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 166312 957 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
27208120 27208120 PRJNA675331_P_NODE_18082_length_251_cov_0.865169_g17910_i0 PRJNA675331 18082 251 0.865169 2.17157419 Streptosporangiaceae bacterium 2339230 Bacteria Bacteria 43.5 0.0201   NR HTP15401.1 2339230 g17910 i0 36.2 0.824701195219124 69 38 75.3 1 234 46 55 123 HTP15401.1 hypothetical protein [Streptosporangiaceae bacterium] diamond 207 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae   Streptosporangiaceae bacterium
27271561 27271561 PRJNA675331_P_NODE_24283_length_241_cov_0.916667_g24111_i0 PRJNA675331 24283 241 0.916667 2.20916747 Microbacterium oxydans 82380 Bacteria Bacteria 125 2.49e-31   NR WP_206516629.1 82380 g24111 i0 86.1 3.85892116182573 79 11 98.3 0 241 5 528 606 WP_206516629.1 excinuclease ABC subunit UvrB [Microbacterium oxydans] diamond 930 125 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium oxydans
27555651 27555651 PRJNA675331_P_NODE_7204_length_362_cov_1.055363_g7032_i0 PRJNA675331 7204 362 1.055363 3.82041406 Jiangellales bacterium 3050264 Bacteria Bacteria 92.4 1.69e-20   NR HSK55743.1 3050264 g7032 i0 42 2.9585635359116 119 63 98.6 2 362 6 85 197 HSK55743.1 fasciclin domain-containing protein [Jiangellales bacterium] diamond 1071 92.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Jiangellales     Jiangellales bacterium
28534865 28534865 PRJNA675331_P_NODE_21807_length_245_cov_0.895349_g21635_i0 PRJNA675331 21807 245 0.895349 2.19360505 Streptomyces collinus 42684 Bacteria Bacteria 42.7 0.0261   NR WP_390932176.1 42684 g21635 i0 43.8 0.587755102040816 48 27 58.8 0 236 93 92 139 WP_390932176.1 EF-hand domain-containing protein [Streptomyces collinus] diamond 144 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces collinus
29051853 29051853 PRJNA675331_P_NODE_9848_length_317_cov_0.946721_g9676_i0 PRJNA675331 9848 317 0.946721 3.00110557 Bacteria 2 Bacteria Bacteria 57.8 4.49e-7   NR WP_396447953.1 1989 g9676 i0 74.2 0.861198738170347 31 8 29.3 0 5 97 441 471 WP_396447953.1 agmatine deiminase family protein [Actinomadura sp.] diamond 273 57.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura sp.
29229506 29229506 PRJNA675331_P_NODE_22009_length_244_cov_1.157895_g21837_i0 PRJNA675331 22009 244 1.157895 2.8252638 Nakamurella sp. 1869182 Bacteria Bacteria 40.8 0.0462   NR MET0864341.1 1869182 g21837 i0 41.8 0.676229508196721 55 31 66.4 1 52 213 8 62 MET0864341.1 Rv2175c family DNA-binding protein [Nakamurella sp.] diamond 165 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Nakamurellales Nakamurellaceae Nakamurella Nakamurella sp.
29576351 29576351 PRJNA675331_P_NODE_6570_length_377_cov_1.516447_g6398_i0 PRJNA675331 6570 377 1.516447 5.71700519 Actinomycetota bacterium 2900548 Bacteria Bacteria 57.4 1.22e-6   NR MDQ3177983.1 2900548 g6398 i0 36.3 1.77453580901857 113 66 85.1 3 374 54 33 145 MDQ3177983.1 tandem-95 repeat protein [Actinomycetota bacterium] diamond 669 57.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30935099 30935099 PRJNA675331_P_NODE_13434_length_279_cov_1.868932_g13262_i0 PRJNA675331 13434 279 1.868932 5.21432028 Streptosporangium saharense 1706840 Bacteria Bacteria 43.1 0.0406   NR WP_184720287.1 1706840 g13262 i0 31.5 0.78494623655914 73 50 78.5 0 258 40 164 236 WP_184720287.1 ABC transporter ATP-binding protein [Streptosporangium saharense] diamond 219 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Streptosporangium Streptosporangium saharense
31199130 31199130 PRJNA675331_P_NODE_8615_length_335_cov_0.965649_g8443_i0 PRJNA675331 8615 335 0.965649 3.23492415 root 1 Root_unresolved Root_unresolved 95.9 8.35e-21   NR WP_119836457.1 1654 g8443 i0 42.3 4.95223880597015 111 64 99.4 0 335 3 56 166 WP_119836457.1 MULTISPECIES: Gfo/Idh/MocA family oxidoreductase [Actinomyces] diamond 1659 96.7 0.991726990692865 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces  
31693777 31693777 PRJNA675331_P_NODE_15077_length_271_cov_0.803030_g14905_i0 PRJNA675331 15077 271 0.80303 2.1762113 Streptomyces sp. HUAS MG91 3156398 Bacteria Bacteria 42.7 0.0475   NR WP_353944426.1 3156398 g14905 i0 39.2 0.874538745387454 79 43 81.9 2 18 239 185 263 WP_353944426.1 DUF1648 domain-containing protein [Streptomyces sp. HUAS MG91] diamond 237 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces tabacisoli
32780167 32780167 PRJNA675331_P_NODE_23580_length_242_cov_0.911243_g23408_i0 PRJNA675331 23580 242 0.911243 2.20520806 root 1 Root_unresolved Root_unresolved 50.4 3.95e-6   NR WP_393231945.1 1932 g23408 i0 43.4 1.68595041322314 53 30 65.7 0 216 58 11 63 WP_393231945.1 ubiquitin-like domain-containing protein [Streptomyces tendae] diamond 408 50.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces tendae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;