RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA675331", tax_kingdom = "Thermotogati" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA675331 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27650701 27650701 PRJNA675331_P_NODE_2224_length_616_cov_1.123389_g2058_i0 PRJNA675331 2224 616 1.123389 6.92007624 Acetomicrobium sp. 1872099 Bacteria Bacteria 186 2.3699999999999995e-55   NR WP_213697459.1 1872099 g2058 i0 44 1.71915584415584 175 98 85.2 0 588 64 57 231 WP_213697459.1 B3/4 domain-containing protein [Acetomicrobium sp.] diamond 1059 186 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Acetomicrobiaceae Acetomicrobium Acetomicrobium sp.
28957157 28957157 PRJNA675331_P_NODE_13028_length_283_cov_1.233333_g12856_i0 PRJNA675331 13028 283 1.233333 3.49033239 Bacteria 2 Bacteria Bacteria 50.4 1.18e-4   NR HPJ26755.1 2053624 g12856 i0 36.2 1.81272084805654 94 51 93.3 2 278 15 783 873 HPJ26755.1 phage tail protein [Synergistaceae bacterium] diamond 513 50.4 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
29040068 29040068 PRJNA675331_P_NODE_7168_length_362_cov_2.629758_g6996_i0 PRJNA675331 7168 362 2.629758 9.51972396 Thermus oshimai 56957 Bacteria Bacteria 57.4 6.88e-7   NR WP_413217796.1 56957 g6996 i0 41.7 1.78176795580111 72 31 59.7 2 218 3 48 108 WP_413217796.1 c-type cytochrome [Thermus oshimai] diamond 645 57.4 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus oshimai

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;