RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA675331", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA675331 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20294887 20294887 PRJNA675331_P_NODE_9936_length_315_cov_3.483471_g9764_i0 PRJNA675331 9936 315 3.483471 10.97293365 Desulfococcus 896 Bacteria Bacteria 473 5.309999999999999e-129   NTclustered gi|2740301463|gb|PP882849.1| 897 g9764 i0 94.218 93.5650793650794 294 16 93 1 11 304 809 517 Desulfococcus multivorans strain JBPS-1b 16S ribosomal RNA gene, partial sequence blastn 29473 473 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae Desulfococcus Desulfococcus multivorans
22325160 22325160 PRJNA675331_P_NODE_22978_length_243_cov_0.905882_g22806_i0 PRJNA675331 22978 243 0.905882 2.20129326 Desulfobacterales bacterium 2044940 Bacteria Bacteria 77.4 2.24e-14   NR NVM23225.1 2044940 g22806 i0 49.4 3.87654320987654 79 39 97.5 1 241 5 62 139 NVM23225.1 DNA primase [Desulfobacterales bacterium] diamond 942 77.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
30492720 30492720 PRJNA675331_P_NODE_19393_length_249_cov_0.875000_g19221_i0 PRJNA675331 19393 249 0.875 2.17875 Desulfuromonadales bacterium 2099678 Bacteria Bacteria 43.5 0.022   NR MDT8422034.1 2099678 g19221 i0 31.4 1.71084337349398 70 48 84.3 0 4 213 241 310 MDT8422034.1 S8 family serine peptidase [Desulfuromonadales bacterium] diamond 426 43.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales     Desulfuromonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;