RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA675331", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA675331 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18500036 18500036 PRJNA675331_P_NODE_21515_length_245_cov_0.895349_g21343_i0 PRJNA675331 21515 245 0.895349 2.19360505 Eukaryota 2759 Fungi Fungi 151 5.26e-41   NR BAL15351.1 278681 g21343 i0 84 16.8612244897959 81 13 99.2 0 245 3 313 393 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 4131 152 0.993421052631579 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
18500086 18500086 PRJNA675331_P_NODE_9715_length_318_cov_1.885714_g9543_i0 PRJNA675331 9715 318 1.885714 5.99657052 Fungi 4751 Fungi Fungi 173 1.41e-48   NR BAL15352.1 70189 g9543 i0 72.6 29.9905660377358 106 29 100 0 318 1 333 438 BAL15352.1 translation elongation factor 2, partial [Olpidium brassicae] diamond 9537 174 0.994252873563218 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;