RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA675331" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 6 ✖

bioproject 1

  • PRJNA675331 · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9576267 9576267 PRJNA675331_P_NODE_1028_length_880_cov_3.458488_g888_i0 PRJNA675331 1028 880 3.458488 30.4346944 uncultured delta proteobacterium HF0010_01J10 710820 Bacteria Bacteria 758 0   NTclustered gi|297180392|gb|GU474842.1| 710820 g888 i0 83.314 382.285227272727 851 113 96 19 37 880 13192 14020 Uncultured delta proteobacterium HF0010_01J10 genomic sequence blastn 336411 758 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0010_01J10
15950544 15950544 PRJNA675331_P_NODE_7893_length_348_cov_0.989091_g7721_i0 PRJNA675331 7893 348 0.989091 3.44203668 Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15 1797895 Bacteria Bacteria 114 5.6399999999999995e-30   NR OGQ88263.1 1797895 g7721 i0 62.8 1.44827586206897 86 32 74.1 0 63 320 5 90 OGQ88263.1 MAG: RNA-binding protein [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 504 114 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
22325101 22325101 PRJNA675331_P_NODE_1418_length_762_cov_3.381713_g1261_i0 PRJNA675331 1418 762 3.381713 25.76865306 uncultured delta proteobacterium HF0070_10I02 710824 Bacteria Bacteria 652 0   NTclustered gi|297181000|gb|GU474857.1| 710824 g1261 i0 82.452 155.456692913386 775 108 99 26 1 759 6199 6961 Uncultured delta proteobacterium HF0070_10I02 genomic sequence blastn 118458 652 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0070_10I02
24873922 24873922 PRJNA675331_P_NODE_4960_length_428_cov_2.166197_g4788_i0 PRJNA675331 4960 428 2.166197 9.27132316 uncultured delta proteobacterium HF0010_01J10 710820 Bacteria Bacteria 442 2.0999999999999994e-119   NTclustered gi|297180392|gb|GU474842.1| 710820 g4788 i0 85.28 245.014018691589 428 63 100 0 1 428 12916 12489 Uncultured delta proteobacterium HF0010_01J10 genomic sequence blastn 104866 442 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0010_01J10
27429808 27429808 PRJNA675331_P_NODE_1043_length_877_cov_1.917910_g902_i0 PRJNA675331 1043 877 1.91791 16.8200707 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2 2013747 Bacteria Bacteria 50.4 0.00127   NR PKN44746.1 2013748 g902 i0 45.6 0.194982896237172 57 28 19.2 2 404 237 16 70 PKN44746.1 MAG: hypothetical protein CVU63_09930, partial [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20] diamond 171 50.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20
27883341 27883341 PRJNA675331_P_NODE_3005_length_538_cov_1.243011_g2837_i0 PRJNA675331 3005 538 1.243011 6.68739918 Bacteria 2 Bacteria Bacteria 66.2 5.1e-9   NR PKN44179.1 2013744 g2837 i0 57.4 0.780669144981413 47 20 26.2 0 2 142 1 47 PKN44179.1 MAG: hypothetical protein CVU59_12320, partial [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-17] diamond 420 66.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-17

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;