RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA675331", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA675331 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30757268 30757268 PRJNA675331_P_NODE_8274_length_340_cov_1.730337_g8102_i0 PRJNA675331 8274 340 1.730337 5.8831458 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 138 9.91e-40   NR XP_013251421.1 5801 g8102 i0 63.5 4.52647058823529 104 37 91.8 1 27 338 16 118 XP_013251421.1 60s ribosomal protein L33-A, putative [Eimeria acervulina] diamond 1539 139 0.992805755395683 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
31579241 31579241 PRJNA675331_P_NODE_4976_length_428_cov_0.864789_g4804_i0 PRJNA675331 4976 428 0.864789 3.70129692 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 130 4.29e-36   NR UKJ88711.2 68886 g4804 i0 60 5.36214953271028 100 40 70.1 0 300 1 10 109 UKJ88711.2 60S ribosomal protein L35a [Theileria orientalis] diamond 2295 131 0.99236641221374 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria orientalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;