RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA675331", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA675331 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8301078 8301078 PRJNA675331_P_NODE_15667_length_267_cov_1.190722_g15495_i0 PRJNA675331 15667 267 1.190722 3.17922774 Opitutaceae bacterium 2006848 Bacteria Bacteria 73.6 7.3e-13   NR MFA5264893.1 2006848 g15495 i0 52.8 1 89 31 100 4 267 1 261 338 MFA5264893.1 M4 family metallopeptidase [Opitutaceae bacterium] diamond 267 73.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
21050339 21050339 PRJNA675331_P_NODE_917_length_933_cov_1.281395_g785_i0 PRJNA675331 917 933 1.281395 11.955415350000001 Fontisphaera persica 2974023 Bacteria Bacteria 976 0   NTclustered gi|2439237958|gb|CP116615.1| 2974023 g785 i0 85.638 219.992497320472 940 122 99 13 3 933 3861198 3862133 Fontisphaera persica strain B-154 chromosome, complete genome blastn 205253 976 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Fontisphaeraceae Fontisphaera Fontisphaera persica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;