RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA675331" and tax_clade = "Haptista"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 7 ✖

bioproject 1

  • PRJNA675331 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6272468 6272468 PRJNA675331_P_NODE_16645_length_260_cov_1.572193_g16473_i0 PRJNA675331 16645 260 1.572193 4.0877018 Diacronema lutheri 2081491 Haptophyta other_Eukaryota 128 1.63e-36   NR KAG8461069.1 2081491 g16473 i0 77.5 3.83076923076923 80 18 92.3 0 241 2 6 85 KAG8461069.1 hypothetical protein KFE25_003638 [Diacronema lutheri] diamond 996 128 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri
7026469 7026469 PRJNA675331_P_NODE_9886_length_316_cov_1.415638_g9714_i0 PRJNA675331 9886 316 1.415638 4.47341608 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 56.5 0.002   NTclustered gi|551601724|ref|XM_005782423.1| 280463 g9714 i0 94.595 3.13607594936709 37 1 12 1 265 301 1357 1392 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 991 56.5 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
28440059 28440059 PRJNA675331_P_NODE_4386_length_453_cov_1.013158_g4214_i0 PRJNA675331 4386 453 1.013158 4.58960574 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 75.1 3.45e-13   NR KOO27677.1 1460289 g4214 i0 30.8 4.72847682119205 133 85 85.4 3 23 409 96 225 KOO27677.1 glutathione s-transferase [Chrysochromulina tobinii] diamond 2142 75.1 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
29461782 29461782 PRJNA675331_P_NODE_19850_length_248_cov_0.880000_g19678_i0 PRJNA675331 19850 248 0.88 2.1824 Prymnesiales 73028 Haptophyta other_Eukaryota 97.8 3.06e-22   NR KAL1524108.1 97485 g19678 i0 56.1 4.98387096774194 82 36 99.2 0 2 247 169 250 KAL1524108.1 hypothetical protein AB1Y20_019018 [Prymnesium parvum] diamond 1236 98.2 0.995926680244399 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
30208009 30208009 PRJNA675331_P_NODE_18532_length_250_cov_1.299435_g18360_i0 PRJNA675331 18532 250 1.299435 3.2485875 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 52.4 1.67e-5   NR XP_005775435.1 280463 g18360 i0 37.5 1.056 88 49 98.4 3 246 1 678 765 XP_005775435.1 hypothetical protein EMIHUDRAFT_195514 [Emiliania huxleyi CCMP1516] diamond 264 52.4 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
30966755 30966755 PRJNA675331_P_NODE_15694_length_267_cov_1.190722_g15522_i0 PRJNA675331 15694 267 1.190722 3.17922774 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 133 8.16e-36   NR KOO22165.1 1460289 g15522 i0 72 0.921348314606742 82 23 92.1 0 3 248 224 305 KOO22165.1 mitochondrial 2-oxoglutarate malate carrier [Chrysochromulina tobinii] diamond 246 133 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
32484938 32484938 PRJNA675331_P_NODE_6879_length_369_cov_1.037162_g6707_i0 PRJNA675331 6879 369 1.037162 3.82712778 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 65.1 2.06e-9   NR XP_005769707.1 280463 g6707 i0 36.1 0.991869918699187 122 50 95.9 5 2 355 163 260 XP_005769707.1 hypothetical protein EMIHUDRAFT_419394 [Emiliania huxleyi CCMP1516] diamond 366 65.1 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;