RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA675042" and tax_phylum = "Pisuviricota"

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tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA675042 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1922465 1922465 PRJNA675042_P_NODE_15782_length_438_cov_1.663014_g15332_i0 PRJNA675042 15782 438 1.663014 7.28400132 Betacoronavirus pandemicum 3418604 Viruses Viruses 58.4 0.001   NTclustered gi|2046855847|emb|OU086747.1| 2697049 g15332 i0 100 0.139269406392694 31 0 7 0 408 438 29834 29864 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 61 58.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
1922736 1922736 PRJNA675042_P_NODE_182242_length_220_cov_3.387755_g181792_i0 PRJNA675042 182242 220 3.387755 7.453061 Betacoronavirus pandemicum 3418604 Viruses Viruses 60.2 1.16e-4   NTclustered gi|2046846597|emb|OU077603.1| 2697049 g181792 i0 100 54.1 32 0 57 0 96 127 30003 30034 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 11902 60.2 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
13401510 13401510 PRJNA675042_P_NODE_77651_length_283_cov_3.680952_g77201_i0 PRJNA675042 77651 283 3.680952 10.41709416 Potyvirus ampeloprasi 3240464 Viruses Viruses 523 4.5999999999999983e-144   NTclustered gi|1722561862|gb|MN059488.1| 42004 g77201 i0 100 32.3922261484099 283 0 100 0 1 283 412 130 Leek yellow stripe virus isolate G56, complete genome blastn 9167 523 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus ampeloprasi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;