RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA675042" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA675042 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7025562 7025562 PRJNA675042_P_NODE_35966_length_354_cov_1.067616_g35516_i0 PRJNA675042 35966 354 1.067616 3.77936064 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 425 1.71e-114   NTclustered gi|325195269|emb|FR826064.1| 890382 g35516 i0 91.586 1.54519774011299 309 24 87 2 1 308 308 1 Albugo laibachii Nc14, genomic contig CONTIG_3158_NC14_v4_446_65 blastn 547 425 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
14675111 14675111 PRJNA675042_P_NODE_127992_length_248_cov_0.880000_g127542_i0 PRJNA675042 127992 248 0.88 2.1824 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 58.4 4.82e-4   NTclustered gi|813199755|ref|XM_012354059.1| 695850 g127542 i0 97.059 1.25403225806452 34 1 14 0 96 129 1106 1073 Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA blastn 311 58.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;