RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA675042" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA675042 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
647324 647324 PRJNA675042_P_NODE_75121_length_287_cov_0.873832_g74671_i0 PRJNA675042 75121 287 0.873832 2.50789784 Florometra sp. BMK-2020 2719553 Echinodermata other_Eukaryota 54.7 0.007   NTclustered gi|1850791165|gb|MT302206.1| 2719553 g74671 i0 100 0.101045296167247 29 0 10 0 139 167 5039 5067 Florometra sp. BMK-2020 mitochondrion, complete genome blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Antedonidae Florometra Florometra sp. BMK-2020
9575056 9575056 PRJNA675042_P_NODE_168368_length_242_cov_0.911243_g167918_i0 PRJNA675042 168368 242 0.911243 2.20520806 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 58.4 4.69e-4   NTclustered gi|2037982977|ref|XM_041604086.1| 7654 g167918 i0 97.143 0.433884297520661 35 0 14 1 209 242 5262 5296 PREDICTED: Lytechinus variegatus uncharacterized LOC121411388 (LOC121411388), transcript variant X2, mRNA blastn 105 58.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
11371757 11371757 PRJNA675042_P_NODE_43469_length_336_cov_1.787072_g43019_i0 PRJNA675042 43469 336 1.787072 6.00456192 root 1 Root_unresolved Root_unresolved 73.1 2.43e-8   NTclustered gi|2038007074|ref|XM_041616830.1| 7654 g43019 i0 95.556 1.11904761904762 45 2 13 0 1 45 1454 1410 PREDICTED: Lytechinus variegatus mucin-like protein (LOC121422029), partial mRNA blastn 376 73.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
18498925 18498925 PRJNA675042_P_NODE_18415_length_421_cov_1.304598_g17965_i0 PRJNA675042 18415 421 1.304598 5.49235758 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 54.7 0.011   NTclustered gi|1752404259|ref|XM_030974533.1| 7668 g17965 i0 100 0.0688836104513064 29 0 7 0 6 34 12916 12944 PREDICTED: Strongylocentrotus purpuratus neurobeachin-like protein 1 (LOC580791), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
23598655 23598655 PRJNA675042_P_NODE_110539_length_251_cov_0.865169_g110089_i0 PRJNA675042 110539 251 0.865169 2.17157419 Ocnus glacialis 3074281 Echinodermata other_Eukaryota 56.5 0.002   NTclustered gi|2587931046|ref|NC_082941.1| 3074281 g110089 i0 90.698 0.171314741035857 43 3 17 1 190 232 16771 16730 Ocnus glacialis mitochondrion, complete genome blastn 43 56.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Dendrochirotida Cucumariidae Ocnus Ocnus glacialis
23599628 23599628 PRJNA675042_P_NODE_30619_length_371_cov_0.822148_g30169_i0 PRJNA675042 30619 371 0.822148 3.05016908 Ophiotreta durbanensis 3135534 Echinodermata other_Eukaryota 52.8 0.035   NTclustered gi|2705278880|gb|ON685890.1| 3135534 g30169 i0 100 0.0754716981132075 28 0 8 0 32 59 1593 1566 Ophiotreta durbanensis mitochondrion, complete genome blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Ophiuroidea Amphilepidida Ophiacanthidae Ophiotreta Ophiotreta durbanensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;