RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA675042" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA675042 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4474315 4474315 PRJNA675042_P_NODE_158924_length_244_cov_0.900585_g158474_i0 PRJNA675042 158924 244 0.900585 2.1974274 Neochlamydia hartmannellae 112235 Bacteria Bacteria 335 1.9499999999999992e-87   NTclustered gi|194594624|gb|EU662269.1| 112235 g158474 i0 98.93 58.3401639344262 187 2 100 0 58 244 382 568 Neochlamydia hartmannellae strain ATCC 50802 23S ribosomal RNA gene, partial sequence blastn 14235 335 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia hartmannellae
23600117 23600117 PRJNA675042_P_NODE_68299_length_295_cov_2.382883_g67849_i0 PRJNA675042 68299 295 2.382883 7.02950485 Neochlamydia hartmannellae 112235 Bacteria Bacteria 420 6.52e-113   NTclustered gi|219857449|ref|NR_025037.1| 112235 g67849 i0 93.31 102.522033898305 284 19 96 0 12 295 432 715 Neochlamydia hartmannellae strain A1Hsp 16S ribosomal RNA, partial sequence blastn 30244 420 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia hartmannellae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;