RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA675042", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA675042 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1168169 1168169 PRJNA675042_P_NODE_37341_length_350_cov_1.667870_g36891_i0 PRJNA675042 37341 350 1.66787 5.837545 Candidatus Electrothrix 1859128 Bacteria Bacteria 56.5 0.003   NTclustered gi|2755823080|gb|CP159373.1| 3062594 g36891 i0 100 0.254285714285714 30 0 9 0 228 257 1505895 1505924 MAG: Candidatus Electrothrix aestuarii isolate Rat1 chromosome, complete genome blastn 89 56.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Candidatus Electrothrix Candidatus Electrothrix aestuarii
3197371 3197371 PRJNA675042_P_NODE_166563_length_243_cov_0.905882_g166113_i0 PRJNA675042 166563 243 0.905882 2.20129326 Desulfobacula toluolica 28223 Bacteria Bacteria 58.4 4.71e-4   NTclustered gi|405104673|emb|FO203503.1| 651182 g166113 i0 87.5 0.230452674897119 56 0 21 3 133 182 2502431 2502485 Desulfobacula toluolica Tol2 complete genome blastn 56 58.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacula Desulfobacula toluolica
27524256 27524256 PRJNA675042_P_NODE_41043_length_341_cov_10.085821_g40593_i0 PRJNA675042 41043 341 10.085821 34.39264961 Desulfocapsa sulfexigens 65555 Bacteria Bacteria 47.8 0.00204   NR HIP82064.1 65555 g40593 i0 52.6 0.932551319648094 38 18 33.4 0 228 341 133 170 HIP82064.1 reverse transcriptase-like protein [Desulfocapsa sulfexigens] diamond 318 47.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfocapsa Desulfocapsa sulfexigens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;