RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA675042" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA675042 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
647606 647606 PRJNA675042_P_NODE_99921_length_258_cov_1.010811_g99471_i0 PRJNA675042 99921 258 1.010811 2.60789238 Oedogonium capilliforme 2831087 Plants Plants 54.7 0.007   NTclustered gi|2031445063|gb|MW250874.1| 2831087 g99471 i0 100 0.112403100775194 29 0 11 0 156 184 22850 22822 Oedogonium capilliforme isolate 269-2_chl plastid, complete genome blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Oedogoniales Oedogoniaceae Oedogonium Oedogonium capilliforme
8821193 8821193 PRJNA675042_P_NODE_34767_length_358_cov_0.736842_g34317_i0 PRJNA675042 34767 358 0.736842 2.63789436 Eukaryota 2759 Plants Plants 56.5 0.003   NTclustered gi|2082270828|ref|XM_043072539.1| 3055 g34317 i0 96.97 5.22067039106145 33 1 9 0 1 33 3873 3841 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_17g735800v5), mRNA blastn 1869 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
13400036 13400036 PRJNA675042_P_NODE_123671_length_249_cov_0.875000_g123221_i0 PRJNA675042 123671 249 0.875 2.17875 Lobochlamys culleus 51693 Plants Plants 52.8 0.023   NTclustered gi|952953841|gb|KT625158.1| 51693 g123221 i0 100 0.112449799196787 28 0 11 0 218 245 12153 12180 Lobochlamys culleus clone contig8 chloroplast, partial genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Lobochlamys Lobochlamys culleus
16470979 16470979 PRJNA675042_P_NODE_41033_length_342_cov_0.728625_g40583_i0 PRJNA675042 41033 342 0.728625 2.4918975 Eukaryota 2759 Plants Plants 52.8 0.032   NTclustered gi|359691140|dbj|AB571545.1| 103875 g40583 i0 100 0.16374269005848 28 0 8 0 315 342 154 127 Trebouxia corticola DNA, microsatellite: Tc16 blastn 56 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia corticola
26828901 26828901 PRJNA675042_P_NODE_9441_length_511_cov_0.840183_g8994_i0 PRJNA675042 9441 511 0.840183 4.29333513 Picochlorum sp. BPE23 2696299 Plants Plants 110 1.43e-25   NR KAI8107375.1 2696299 g8994 i0 39.6 1.98434442270059 169 102 99.2 0 509 3 101 269 KAI8107375.1 hypothetical protein M9435_002406 [Picochlorum sp. BPE23] diamond 1014 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23
29241124 29241124 PRJNA675042_P_NODE_36469_length_353_cov_0.821429_g36019_i0 PRJNA675042 36469 353 0.821429 2.89964437 Eukaryota 2759 Plants Plants 71.6 1.05e-11   NR XP_011399604.1 3075 g36019 i0 73.9 66.4589235127479 46 12 39.1 0 4 141 513 558 XP_011399604.1 Pre-mRNA-processing-splicing factor 8 [Auxenochlorella protothecoides] diamond 23460 72 0.994444444444444 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
31547653 31547653 PRJNA675042_P_NODE_80096_length_281_cov_0.860577_g79646_i0 PRJNA675042 80096 281 0.860577 2.41822137 Eukaryota 2759 Plants Plants 100 4.1500000000000003e-22   NR KAF5834341.1 3046 g79646 i0 60.5 99.8007117437722 76 30 81.1 0 1 228 516 591 KAF5834341.1 splicing factor, component of the U5 snRNP and of the spliceosome [Dunaliella salina] diamond 28044 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;