RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA675042", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA675042 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
646110 646110 PRJNA675042_P_NODE_14281_length_450_cov_2.859416_g13831_i0 PRJNA675042 14281 450 2.859416 12.867372 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 575 2.0899999999999993e-159   NTclustered gi|2874253690|emb|OY969416.1| 412056 g13831 i0 95.798 167.373333333333 357 13 100 2 1 355 1315863 1315507 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 75318 575 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
4475215 4475215 PRJNA675042_P_NODE_60804_length_306_cov_5.214592_g60354_i0 PRJNA675042 60804 306 5.214592 15.95665152 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 547 2.9899999999999992e-151   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g60354 i0 100 202.967320261438 296 0 97 0 8 303 5626467 5626172 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 62108 547 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
12647635 12647635 PRJNA675042_P_NODE_63210_length_303_cov_1.060870_g62760_i0 PRJNA675042 63210 303 1.06087 3.2144361 Akkermansia 239934 Bacteria Bacteria 52.8 0.028   NTclustered gi|2669347435|gb|CP143890.1| 3115151 g62760 i0 100 0.184818481848185 28 0 9 0 101 128 2131156 2131129 Akkermansia sp. AE01SA01 chromosome, complete genome blastn 56 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp. AE01SA01

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;