RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA675042", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA675042 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10849854 10849854 PRJNA675042_P_NODE_10889_length_489_cov_0.985577_g10441_i0 PRJNA675042 10889 489 0.985577 4.81947153 Limnoglobus roseus 2598579 Bacteria Bacteria 84.2 1.69e-11   NTclustered gi|1733446852|gb|CP042425.1| 2598579 g10441 i0 86.667 5.78118609406953 75 10 15 0 415 489 3146139 3146213 Limnoglobus roseus strain PX52 chromosome, complete genome blastn 2827 84.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Limnoglobus Limnoglobus roseus
14674928 14674928 PRJNA675042_P_NODE_110732_length_251_cov_0.865169_g110282_i0 PRJNA675042 110732 251 0.865169 2.17157419 Gimesia aquarii 2527964 Bacteria Bacteria 60.2 1.36e-4   NTclustered gi|1712569666|gb|CP037422.1| 2527964 g110282 i0 94.872 0.155378486055777 39 1 15 1 76 113 5062572 5062534 Gimesia aquarii strain V202 chromosome blastn 39 60.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia aquarii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;