contig_metadata
8 rows where bioproject = "PRJNA675042" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 646110 | 646110 | PRJNA675042_P_NODE_14281_length_450_cov_2.859416_g13831_i0 | PRJNA675042 | 14281 | 450 | 2.859416 | 12.867372 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 575 | 2.0899999999999993e-159 | NTclustered | gi|2874253690|emb|OY969416.1| | 412056 | g13831 | i0 | 95.798 | 167.373333333333 | 357 | 13 | 100 | 2 | 1 | 355 | 1315863 | 1315507 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 | blastn | 75318 | 575 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 4474315 | 4474315 | PRJNA675042_P_NODE_158924_length_244_cov_0.900585_g158474_i0 | PRJNA675042 | 158924 | 244 | 0.900585 | 2.1974274 | Neochlamydia hartmannellae | 112235 | Bacteria | Bacteria | 335 | 1.9499999999999992e-87 | NTclustered | gi|194594624|gb|EU662269.1| | 112235 | g158474 | i0 | 98.93 | 58.3401639344262 | 187 | 2 | 100 | 0 | 58 | 244 | 382 | 568 | Neochlamydia hartmannellae strain ATCC 50802 23S ribosomal RNA gene, partial sequence | blastn | 14235 | 335 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Neochlamydia | Neochlamydia hartmannellae | |
| 4475215 | 4475215 | PRJNA675042_P_NODE_60804_length_306_cov_5.214592_g60354_i0 | PRJNA675042 | 60804 | 306 | 5.214592 | 15.95665152 | Roseimicrobium sp. ORNL1 | 2711231 | Bacteria | Bacteria | 547 | 2.9899999999999992e-151 | NTclustered | gi|1815841271|gb|CP049143.1| | 2711231 | g60354 | i0 | 100 | 202.967320261438 | 296 | 0 | 97 | 0 | 8 | 303 | 5626467 | 5626172 | Roseimicrobium sp. ORNL1 chromosome, complete genome | blastn | 62108 | 547 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Roseimicrobium | Roseimicrobium sp. ORNL1 | |
| 10849854 | 10849854 | PRJNA675042_P_NODE_10889_length_489_cov_0.985577_g10441_i0 | PRJNA675042 | 10889 | 489 | 0.985577 | 4.81947153 | Limnoglobus roseus | 2598579 | Bacteria | Bacteria | 84.2 | 1.69e-11 | NTclustered | gi|1733446852|gb|CP042425.1| | 2598579 | g10441 | i0 | 86.667 | 5.78118609406953 | 75 | 10 | 15 | 0 | 415 | 489 | 3146139 | 3146213 | Limnoglobus roseus strain PX52 chromosome, complete genome | blastn | 2827 | 84.2 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Limnoglobus | Limnoglobus roseus | |
| 12647635 | 12647635 | PRJNA675042_P_NODE_63210_length_303_cov_1.060870_g62760_i0 | PRJNA675042 | 63210 | 303 | 1.06087 | 3.2144361 | Akkermansia | 239934 | Bacteria | Bacteria | 52.8 | 0.028 | NTclustered | gi|2669347435|gb|CP143890.1| | 3115151 | g62760 | i0 | 100 | 0.184818481848185 | 28 | 0 | 9 | 0 | 101 | 128 | 2131156 | 2131129 | Akkermansia sp. AE01SA01 chromosome, complete genome | blastn | 56 | 52.8 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansia | Akkermansia sp. AE01SA01 | |
| 14674928 | 14674928 | PRJNA675042_P_NODE_110732_length_251_cov_0.865169_g110282_i0 | PRJNA675042 | 110732 | 251 | 0.865169 | 2.17157419 | Gimesia aquarii | 2527964 | Bacteria | Bacteria | 60.2 | 1.36e-4 | NTclustered | gi|1712569666|gb|CP037422.1| | 2527964 | g110282 | i0 | 94.872 | 0.155378486055777 | 39 | 1 | 15 | 1 | 76 | 113 | 5062572 | 5062534 | Gimesia aquarii strain V202 chromosome | blastn | 39 | 60.2 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | Gimesia | Gimesia aquarii | |
| 23600117 | 23600117 | PRJNA675042_P_NODE_68299_length_295_cov_2.382883_g67849_i0 | PRJNA675042 | 68299 | 295 | 2.382883 | 7.02950485 | Neochlamydia hartmannellae | 112235 | Bacteria | Bacteria | 420 | 6.52e-113 | NTclustered | gi|219857449|ref|NR_025037.1| | 112235 | g67849 | i0 | 93.31 | 102.522033898305 | 284 | 19 | 96 | 0 | 12 | 295 | 432 | 715 | Neochlamydia hartmannellae strain A1Hsp 16S ribosomal RNA, partial sequence | blastn | 30244 | 420 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Neochlamydia | Neochlamydia hartmannellae | |
| 32611108 | 32611108 | PRJNA675042_P_NODE_52500_length_320_cov_0.935223_g52050_i0 | PRJNA675042 | 52500 | 320 | 0.935223 | 2.9927136 | Candidatus Omnitrophota bacterium | 2035772 | Bacteria | Bacteria | 47.8 | 0.00156 | NR | MBI2095101.1 | 2035772 | g52050 | i0 | 66.7 | 1.228125 | 30 | 10 | 28.1 | 0 | 313 | 224 | 3 | 32 | MBI2095101.1 translational GTPase TypA [Candidatus Omnitrophota bacterium] | diamond | 393 | 47.8 | 1 | Bacteria | PVC group | Pseudomonadati | Candidatus Omnitrophota | Candidatus Omnitrophota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;