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contig_metadata

15 rows where bioproject = "PRJNA675042", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 15 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 15 ✖

bioproject 1

  • PRJNA675042 · 15 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1168200 1168200 PRJNA675042_P_NODE_41361_length_341_cov_0.970149_g40911_i0 PRJNA675042 41361 341 0.970149 3.30820809 Metazoa 33208 Nematoda Nematoda 52.8 0.032   NTclustered gi|690018845|emb|LM526138.1| 174720 g40911 i0 100 1.29325513196481 28 0 8 0 256 283 11501 11528 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000495 blastn 441 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
4473752 4473752 PRJNA675042_P_NODE_108744_length_251_cov_0.865169_g108294_i0 PRJNA675042 108744 251 0.865169 2.17157419 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.023   NTclustered gi|687865308|emb|LK927579.1| 6239 g108294 i0 100 0.223107569721116 28 0 11 0 215 242 91773 91746 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000046 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9574473 9574473 PRJNA675042_P_NODE_116108_length_250_cov_0.870056_g115658_i0 PRJNA675042 116108 250 0.870056 2.17514 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.006   NTclustered gi|690019508|emb|LM527023.1| 174720 g115658 i0 96.97 0.132 33 0 13 1 119 150 175 207 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0001362 blastn 33 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
10851504 10851504 PRJNA675042_P_NODE_84269_length_276_cov_0.817734_g83819_i0 PRJNA675042 84269 276 0.817734 2.25694584 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.007   NTclustered gi|687022731|emb|LM525645.1| 174720 g83819 i0 90.476 0.152173913043478 42 2 14 2 142 181 8113 8154 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000052 blastn 42 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
13399848 13399848 PRJNA675042_P_NODE_107631_length_251_cov_0.865169_g107181_i0 PRJNA675042 107631 251 0.865169 2.17157419 Strongyloides papillosus 174720 Nematoda Nematoda 60.2 1.36e-4   NTclustered gi|690018778|emb|LM526074.1| 174720 g107181 i0 100 0.127490039840637 32 0 13 0 179 210 5373 5342 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000436 blastn 32 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
13400009 13400009 PRJNA675042_P_NODE_121611_length_249_cov_0.875000_g121161_i0 PRJNA675042 121611 249 0.875 2.17875 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.023   NTclustered gi|687022762|emb|LM525676.1| 174720 g121161 i0 96.774 0.124497991967871 31 1 12 0 51 81 46288 46318 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000074 blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
13400860 13400860 PRJNA675042_P_NODE_29631_length_374_cov_1.023256_g29181_i0 PRJNA675042 29631 374 1.023256 3.82697744 Cylicocyclus auriculatus 71428 Nematoda Nematoda 52.8 0.036   NTclustered gi|1707510884|ref|NC_043849.1| 71428 g29181 i0 100 0.0748663101604278 28 0 7 0 18 45 5251 5278 Cylicocyclus auriculatus mitochondrion, complete genome blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus auriculatus
14675654 14675654 PRJNA675042_P_NODE_177292_length_241_cov_0.916667_g176842_i0 PRJNA675042 177292 241 0.916667 2.20916747 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.022   NTclustered gi|687022675|emb|LM525589.1| 174720 g176842 i0 100 0.116182572614108 28 0 12 0 107 134 9226 9253 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000012 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
17746254 17746254 PRJNA675042_P_NODE_78474_length_282_cov_5.612440_g78024_i0 PRJNA675042 78474 282 5.61244 15.8270808 Rhabditida 6236 Nematoda Nematoda 119 2.5300000000000003e-22   NTclustered gi|2547219|gb|AF023856.1|AF023856 6304 g78024 i0 97.143 18.9255319148936 70 2 25 0 6 75 420 489 Meloidogyne arenaria blastn 5337 119 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne arenaria
19772827 19772827 PRJNA675042_P_NODE_120416_length_249_cov_0.875000_g119966_i0 PRJNA675042 120416 249 0.875 2.17875 Spirocerca lupi 304461 Nematoda Nematoda 52.8 0.023   NTclustered gi|482651442|ref|NC_021135.1| 304461 g119966 i0 100 0.112449799196787 28 0 11 0 118 145 5576 5603 Spirocerca lupi mitochondrion, complete genome blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Thelaziidae Spirocerca Spirocerca lupi
21049133 21049133 PRJNA675042_P_NODE_180477_length_241_cov_0.916667_g180027_i0 PRJNA675042 180477 241 0.916667 2.20916747 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.006   NTclustered gi|690018478|emb|LM525716.1| 174720 g180027 i0 100 0.120331950207469 29 0 12 0 195 223 34946 34974 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000112 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
22323182 22323182 PRJNA675042_P_NODE_110218_length_251_cov_0.865169_g109768_i0 PRJNA675042 110218 251 0.865169 2.17157419 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.006   NTclustered gi|687022647|emb|LM525561.1| 174720 g109768 i0 100 0.227091633466135 29 0 12 0 153 181 139482 139510 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000006 blastn 57 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
22324750 22324750 PRJNA675042_P_NODE_72398_length_290_cov_1.092166_g71948_i0 PRJNA675042 72398 290 1.092166 3.1672814 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.027   NTclustered gi|687022764|emb|LM525678.1| 174720 g71948 i0 94.286 0.120689655172414 35 1 12 1 112 146 20278 20311 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000076 blastn 35 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
22324816 22324816 PRJNA675042_P_NODE_77338_length_284_cov_1.094787_g76888_i0 PRJNA675042 77338 284 1.094787 3.10919508 Trichostrongylus vitrinus 40352 Nematoda Nematoda 52.8 0.026   NTclustered gi|288900692|ref|NC_013807.1| 40352 g76888 i0 100 0.0985915492957746 28 0 10 0 249 276 6308 6335 Trichostrongylus vitrinus mitochondrion, complete genome blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Trichostrongylus Trichostrongylus vitrinus
24872640 24872640 PRJNA675042_P_NODE_168820_length_242_cov_0.911243_g168370_i0 PRJNA675042 168820 242 0.911243 2.20520806 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.006   NTclustered gi|690018572|emb|LM525810.1| 174720 g168370 i0 96.875 0.132231404958678 32 1 13 0 211 242 33699 33730 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000194 blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;