RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA675042", tax_clade = "Discoba" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA675042 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8299048 8299048 PRJNA675042_P_NODE_100647_length_257_cov_1.239130_g100197_i0 PRJNA675042 100647 257 1.23913 3.1845641 Acrasis kona 1008807 Heterolobosea other_Eukaryota 65.8 3e-6   NTclustered gi|756877081|ref|NC_026286.1| 1008807 g100197 i0 95.238 0.163424124513619 42 1 16 1 103 144 20376 20336 Acrasis kona culture-collection ATCC:MYA-3509 mitochondrion, complete genome blastn 42 65.8 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
10850440 10850440 PRJNA675042_P_NODE_164769_length_243_cov_0.905882_g164319_i0 PRJNA675042 164769 243 0.905882 2.20129326 Vickermania ingenoplastis 2720891 Euglenozoa other_Eukaryota 52.8 0.022   NTclustered gi|2907536486|gb|PQ679924.1| 2720891 g164319 i0 100 0.11522633744856 28 0 12 0 4 31 46495 46468 Vickermania ingenoplastis strain CP21 minicircle kinetoplast, complete sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Vickermania Vickermania ingenoplastis
12125458 12125458 PRJNA675042_P_NODE_137910_length_247_cov_0.885057_g137460_i0 PRJNA675042 137910 247 0.885057 2.18609079 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 52.8 0.022   NTclustered gi|1624744867|ref|XM_029023362.1| 67003 g137460 i0 100 0.11336032388664 28 0 11 0 30 57 5959 5986 Trypanosoma theileri uncharacterized protein (TM35_000063250), partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;