RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA675042", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA675042 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12126918 12126918 PRJNA675042_P_NODE_93950_length_264_cov_2.277487_g93500_i0 PRJNA675042 93950 264 2.277487 6.01256568 TM7 phylum sp. oral taxon 349 713051 Bacteria Bacteria 357 4.5599999999999997e-94   NTclustered gi|2028829559|gb|CP072328.1| 713051 g93500 i0 100 99.405303030303 193 0 100 0 72 264 907355 907163 TM7 phylum sp. oral taxon 349 strain PM007 chromosome, complete genome blastn 26243 357 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 349
14676637 14676637 PRJNA675042_P_NODE_8732_length_523_cov_2.051111_g8286_i0 PRJNA675042 8732 523 2.051111 10.72731053 uncultured Candidatus Saccharibacteria bacterium 179883 Bacteria Bacteria 749 0   NTclustered gi|158515186|gb|EU056401.1| 179883 g8286 i0 99.043 100.38240917782 418 2 99 2 4 419 606 189 Uncultured candidate division TM7 bacterium clone C12_003 16S ribosomal RNA gene, partial sequence blastn 52500 749 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         uncultured Candidatus Saccharibacteria bacterium
31820157 31820157 PRJNA675042_P_NODE_28577_length_377_cov_2.424342_g28127_i0 PRJNA675042 28577 377 2.424342 9.13976934 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 48.9 0.00113   NR HTH69981.1 2973664 g28127 i0 33.3 0.740053050397878 93 59 73.2 2 82 357 488 578 HTH69981.1 HAD-IC family P-type ATPase [Candidatus Saccharimonadales bacterium] diamond 279 48.9 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;