RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA675042" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 10 ✖

bioproject 1

  • PRJNA675042 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12126918 12126918 PRJNA675042_P_NODE_93950_length_264_cov_2.277487_g93500_i0 PRJNA675042 93950 264 2.277487 6.01256568 TM7 phylum sp. oral taxon 349 713051 Bacteria Bacteria 357 4.5599999999999997e-94   NTclustered gi|2028829559|gb|CP072328.1| 713051 g93500 i0 100 99.405303030303 193 0 100 0 72 264 907355 907163 TM7 phylum sp. oral taxon 349 strain PM007 chromosome, complete genome blastn 26243 357 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 349
14676637 14676637 PRJNA675042_P_NODE_8732_length_523_cov_2.051111_g8286_i0 PRJNA675042 8732 523 2.051111 10.72731053 uncultured Candidatus Saccharibacteria bacterium 179883 Bacteria Bacteria 749 0   NTclustered gi|158515186|gb|EU056401.1| 179883 g8286 i0 99.043 100.38240917782 418 2 99 2 4 419 606 189 Uncultured candidate division TM7 bacterium clone C12_003 16S ribosomal RNA gene, partial sequence blastn 52500 749 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         uncultured Candidatus Saccharibacteria bacterium
17224998 17224998 PRJNA675042_P_NODE_38554_length_347_cov_1.124088_g38104_i0 PRJNA675042 38554 347 1.124088 3.90058536 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 52.8 0.033   NTclustered gi|2621702180|emb|OY760177.1| 2044595 g38104 i0 100 0.0806916426512968 28 0 8 0 252 279 217016 216989 MAG: Candidatus Gracilibacteria bacterium isolate ba77f91b-d06a-446b-8ae6-f296fa1be4ef genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
21048278 21048278 PRJNA675042_P_NODE_100377_length_257_cov_1.565217_g99927_i0 PRJNA675042 100377 257 1.565217 4.02260769 Candidatus Campbellbacteria bacterium GW2011_OD1_34_28 1618633 Bacteria Bacteria 56.5 0.002   NTclustered gi|837353685|gb|CP011215.1| 1618633 g99927 i0 100 0.116731517509728 30 0 12 0 94 123 382133 382162 MAG: Candidatus Campbellbacteria bacterium GW2011_OD1_34_28 chromosome, complete genome blastn 30 56.5 1 Bacteria Bacteria candidate phyla   Candidatus Campbelliibacteriota         Candidatus Campbellbacteria bacterium GW2011_OD1_34_28
27018556 27018556 PRJNA675042_P_NODE_117802_length_250_cov_0.870056_g117352_i0 PRJNA675042 117802 250 0.870056 2.17514 Minisyncoccota bacterium 2053589 Bacteria Bacteria 55.1 2.2e-7   NR MDR3548586.1 2053589 g117352 i0 38 1.836 79 49 94.8 0 1 237 21 99 MDR3548586.1 protein kinase [Candidatus Paceibacterota bacterium] diamond 459 55.1 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30176534 30176534 PRJNA675042_P_NODE_120172_length_249_cov_0.875000_g119722_i0 PRJNA675042 120172 249 0.875 2.17875 Candidatus Firestoneibacteriota bacterium 2715505 Bacteria Bacteria 44.3 0.012   NR MFH1825475.1 2715505 g119722 i0 35.8 0.63855421686747 53 34 63.9 0 85 243 571 623 MFH1825475.1 hypothetical protein [Candidatus Firestonebacteria bacterium] diamond 159 44.3 1 Bacteria Bacteria candidate phyla   Candidatus Firestoneibacteriota         Candidatus Firestoneibacteriota bacterium
31820157 31820157 PRJNA675042_P_NODE_28577_length_377_cov_2.424342_g28127_i0 PRJNA675042 28577 377 2.424342 9.13976934 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 48.9 0.00113   NR HTH69981.1 2973664 g28127 i0 33.3 0.740053050397878 93 59 73.2 2 82 357 488 578 HTH69981.1 HAD-IC family P-type ATPase [Candidatus Saccharimonadales bacterium] diamond 279 48.9 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
31978430 31978430 PRJNA675042_P_NODE_64738_length_301_cov_0.960526_g64288_i0 PRJNA675042 64738 301 0.960526 2.89118326 Parcubacteria group bacterium 2026774 Bacteria Bacteria 44.7 0.00907   NR NQV00999.1 2026774 g64288 i0 33.3 0.687707641196013 69 46 68.8 0 270 64 10 78 NQV00999.1 PilN domain-containing protein [Parcubacteria group bacterium] diamond 207 44.7 1 Bacteria Bacteria candidate phyla             Parcubacteria group bacterium
32263546 32263546 PRJNA675042_P_NODE_5718_length_600_cov_3.628083_g5284_i0 PRJNA675042 5718 600 3.628083 21.768498 Candidatus Babeliales bacterium 2803731 Bacteria Bacteria 155 8.029999999999999e-43   NR MFI5333390.1 2803731 g5284 i0 64.9 0.555 111 39 55.5 0 9 341 169 279 MFI5333390.1 hypothetical protein [Candidatus Babeliales bacterium] diamond 333 155 1 Bacteria Bacteria candidate phyla     Candidatus Babeliae Candidatus Babeliales     Candidatus Babeliales bacterium
32894311 32894311 PRJNA675042_P_NODE_26880_length_383_cov_1.461290_g26430_i0 PRJNA675042 26880 383 1.46129 5.5967407 candidate division TM6 bacterium Zodletone_IIa 1511133 Bacteria Bacteria 257 7.5e-86   NR KHD90098.1 1511133 g26430 i0 100 0.986945169712794 126 0 98.7 0 378 1 1 126 KHD90098.1 hypothetical protein AH06_01995, partial [candidate division TM6 bacterium Zodletone_IIa] diamond 378 257 1 Bacteria Bacteria candidate phyla             candidate division TM6 bacterium Zodletone_IIa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;