RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA675042", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA675042 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3197934 3197934 PRJNA675042_P_NODE_42483_length_338_cov_9.064151_g42033_i0 PRJNA675042 42483 338 9.064151 30.63683038 Vannella septentrionalis 197531 Discosea other_Eukaryota 494 4.41e-135   NTclustered gi|300078499|gb|GU001161.1| 197531 g42033 i0 96.939 42.2988165680473 294 9 87 0 9 302 1149 856 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14297 494 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
17225173 17225173 PRJNA675042_P_NODE_5214_length_620_cov_2.623400_g4783_i0 PRJNA675042 5214 620 2.6234 16.26508 Acanthamoeba comandoni 65659 Discosea other_Eukaryota 124 1.2799999999999999e-23   NTclustered gi|28194600|gb|AF479544.1| 65659 g4783 i0 76.23 11.75 244 53 39 4 155 396 687 927 Acanthamoeba comandoni strain ATCC 30135 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 7285 124 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba comandoni
23599056 23599056 PRJNA675042_P_NODE_148379_length_245_cov_0.895349_g147929_i0 PRJNA675042 148379 245 0.895349 2.19360505 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 52.8 0.022   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g147929 i0 100 0.114285714285714 28 0 11 0 93 120 17255 17228 Thecamoeba quadrilineata mitochondrion, complete genome blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;