RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where bioproject = "PRJNA675042" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 14 ✖

bioproject 1

  • PRJNA675042 · 14 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
646015 646015 PRJNA675042_P_NODE_134601_length_247_cov_0.885057_g134151_i0 PRJNA675042 134601 247 0.885057 2.18609079 Cavenderia fasciculata 261658 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|470243907|ref|XM_004355633.1| 261658 g134151 i0 100 0.477732793522267 30 0 12 0 43 72 38 9 Cavenderia fasciculata uncharacterized protein (DFA_08189), partial mRNA blastn 118 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
3197934 3197934 PRJNA675042_P_NODE_42483_length_338_cov_9.064151_g42033_i0 PRJNA675042 42483 338 9.064151 30.63683038 Vannella septentrionalis 197531 Discosea other_Eukaryota 494 4.41e-135   NTclustered gi|300078499|gb|GU001161.1| 197531 g42033 i0 96.939 42.2988165680473 294 9 87 0 9 302 1149 856 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14297 494 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
3198305 3198305 PRJNA675042_P_NODE_74023_length_288_cov_1.074419_g73573_i0 PRJNA675042 74023 288 1.074419 3.09432672 Cavenderia fasciculata 261658 Evosea other_Eukaryota 58.4 5.73e-4   NTclustered gi|470248899|ref|XM_004357936.1| 261658 g73573 i0 97.059 0.930555555555556 34 1 12 0 170 203 302 269 Cavenderia fasciculata uncharacterized protein (DFA_00277), partial mRNA blastn 268 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
8300853 8300853 PRJNA675042_P_NODE_85667_length_274_cov_1.149254_g85217_i0 PRJNA675042 85667 274 1.149254 3.14895596 Acytostelium subglobosum 361139 Evosea other_Eukaryota 52.8 0.025   NTclustered gi|831756689|ref|XM_012893346.1| 1410327 g85217 i0 100 0.102189781021898 28 0 10 0 16 43 352 325 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
10097165 10097165 PRJNA675042_P_NODE_96508_length_262_cov_0.915344_g96058_i0 PRJNA675042 96508 262 0.915344 2.39820128 Dictyostelium 5782 Evosea other_Eukaryota 54.7 0.007   NTclustered gi|1237201|emb|X96869.1| 44689 g96058 i0 100 0.221374045801527 29 0 11 0 163 191 1606 1634 D.discoideum dokA gene blastn 58 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
13399842 13399842 PRJNA675042_P_NODE_107111_length_251_cov_0.865169_g106661_i0 PRJNA675042 107111 251 0.865169 2.17157419 Heterostelium album 2086695 Evosea other_Eukaryota 60.2 1.36e-4   NTclustered gi|1160567028|ref|XM_020581139.1| 670386 g106661 i0 94.737 0.151394422310757 38 2 15 0 88 125 1456 1419 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 38 60.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
14675768 14675768 PRJNA675042_P_NODE_21792_length_404_cov_1.395770_g21342_i0 PRJNA675042 21792 404 1.39577 5.6389108 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.039   NTclustered gi|66807290|ref|XM_632276.1| 352472 g21342 i0 100 0.0693069306930693 28 0 7 0 255 282 2690 2663 Dictyostelium discoideum AX4 DUF1683 family protein (DDB_G0287157) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
15948835 15948835 PRJNA675042_P_NODE_137133_length_247_cov_0.885057_g136683_i0 PRJNA675042 137133 247 0.885057 2.18609079 Heterostelium album 2086695 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|1160557316|ref|XM_020575491.1| 670386 g136683 i0 96.97 0.133603238866397 33 1 13 0 95 127 150 182 Polysphondylium pallidum PN500 threonine ammonia-lyase partial mRNA blastn 33 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
17225173 17225173 PRJNA675042_P_NODE_5214_length_620_cov_2.623400_g4783_i0 PRJNA675042 5214 620 2.6234 16.26508 Acanthamoeba comandoni 65659 Discosea other_Eukaryota 124 1.2799999999999999e-23   NTclustered gi|28194600|gb|AF479544.1| 65659 g4783 i0 76.23 11.75 244 53 39 4 155 396 687 927 Acanthamoeba comandoni strain ATCC 30135 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 7285 124 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba comandoni
19772767 19772767 PRJNA675042_P_NODE_114776_length_250_cov_0.870056_g114326_i0 PRJNA675042 114776 250 0.870056 2.17514 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.023   NTclustered gi|66799980|ref|XM_628914.1| 352472 g114326 i0 96.774 0.124 31 1 12 0 49 79 462 432 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0293866) mRNA, complete cds blastn 31 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
19774233 19774233 PRJNA675042_P_NODE_70936_length_292_cov_1.054795_g70486_i0 PRJNA675042 70936 292 1.054795 3.0800014 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.027   NTclustered gi|66805112|ref|XM_631197.1| 352472 g70486 i0 100 0.0958904109589041 28 0 10 0 11 38 6369 6396 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0289385) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
19774259 19774259 PRJNA675042_P_NODE_74096_length_288_cov_1.074419_g73646_i0 PRJNA675042 74096 288 1.074419 3.09432672 Acytostelium subglobosum 361139 Evosea other_Eukaryota 52.8 0.027   NTclustered gi|831765947|ref|XM_012896185.1| 1410327 g73646 i0 100 0.0972222222222222 28 0 10 0 130 157 806 779 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
22323349 22323349 PRJNA675042_P_NODE_124798_length_249_cov_0.875000_g124348_i0 PRJNA675042 124798 249 0.875 2.17875 Heterostelium album 2086695 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|1160563486|ref|XM_020579958.1| 670386 g124348 i0 100 0.686746987951807 30 0 12 0 204 233 184 155 Polysphondylium pallidum PN500 cyclin-like F-box containing protein partial mRNA blastn 171 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
23599056 23599056 PRJNA675042_P_NODE_148379_length_245_cov_0.895349_g147929_i0 PRJNA675042 148379 245 0.895349 2.19360505 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 52.8 0.022   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g147929 i0 100 0.114285714285714 28 0 11 0 93 120 17255 17228 Thecamoeba quadrilineata mitochondrion, complete genome blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;