RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA674308", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

  • Pisuviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA674308 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1920701 1920701 PRJNA674308_P_NODE_14202_length_255_cov_7.946602_g13967_i0 PRJNA674308 14202 255 7.946602 20.2638351 Sopidub virus 3131684 Viruses Viruses 169 2.2e-37   NTclustered gi|2717323145|gb|PP173985.1| 3131684 g13967 i0 91.129 59.4509803921569 124 11 49 0 132 255 2130 2253 MAG: Sopidub virus isolate SP1B_k141_213983 genomic sequence blastn 15160 169 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Picobirnaviridae   Sopidub virus
7023501 7023501 PRJNA674308_P_NODE_42066_length_166_cov_59596.615385_g41831_i0 PRJNA674308 42066 166 59596.615385 98930.3815391 Betacoronavirus pandemicum 3418604 Viruses Viruses 102 1.36e-17   NTclustered gi|2155033579|emb|OV039277.1| 2697049 g41831 i0 84 11.4638554216867 125 0 63 2 62 166 30637 30513 Severe acute respiratory syndrome coronavirus 2 isolate 165 genome assembly, chromosome: 165 blastn 1903 102 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14673710 14673710 PRJNA674308_P_NODE_25032_length_200_cov_1.178808_g24797_i0 PRJNA674308 25032 200 1.178808 2.357616 Polemovirus PNLV 3431723 Viruses Viruses 368 1.52e-97   NTclustered gi|2419393215|gb|ON398503.1| 305785 g24797 i0 100 3.98 199 0 99 0 1 199 1220 1418 Poinsettia latent virus isolate PV-0629 P0 protein, suppressor of RNA silencing (ORF0), P1-P2 protein, RNA-dependent RNA polymerase (ORF1-ORF2), P1 protein, replication-associated protein (ORF1), and coat protein (ORF3) genes, complete cds blastn 796 368 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Sobelivirales Solemoviridae Polemovirus Polemovirus PNLV
22322032 22322032 PRJNA674308_P_NODE_28898_length_187_cov_9840.318841_g28663_i0 PRJNA674308 28898 187 9840.318841 18401.39623267 Betacoronavirus pandemicum 3418604 Viruses Viruses 99 2.03e-16   NTclustered gi|2155033579|emb|OV039277.1| 2697049 g28663 i0 100 16.7112299465241 53 0 55 0 1 53 30565 30513 Severe acute respiratory syndrome coronavirus 2 isolate 165 genome assembly, chromosome: 165 blastn 3125 99 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;