RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA674308", tax_phylum = "Cossaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Cossaviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA674308 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3195652 3195652 PRJNA674308_P_NODE_37823_length_168_cov_1.697479_g37588_i0 PRJNA674308 37823 168 1.697479 2.85176472 Human papillomavirus 10566 Viruses Viruses 300 4.56e-77   NTclustered gi|1559669517|gb|MH777359.2| 10566 g37588 i0 98.81 1 168 2 100 0 1 168 459 292 MAG: Human papillomavirus isolate HPV-mSK_220, partial genome blastn 168 300 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
10848832 10848832 PRJNA674308_P_NODE_36849_length_169_cov_0.866667_g36614_i0 PRJNA674308 36849 169 0.866667 1.46466723 Human papillomavirus 10566 Viruses Viruses 307 2.73e-79   NTclustered gi|1559669517|gb|MH777359.2| 10566 g36614 i0 99.408 1 169 1 100 0 1 169 7212 7044 MAG: Human papillomavirus isolate HPV-mSK_220, partial genome blastn 169 307 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;