RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA674308", tax_clade = "sulfur-oxidizing symbionts" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 1 ✖

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 1 ✖

bioproject 1

  • PRJNA674308 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31642171 31642171 PRJNA674308_P_NODE_6276_length_380_cov_1.320242_g6041_i0 PRJNA674308 6276 380 1.320242 5.0169196 Bacteria 2 Bacteria Bacteria 115 4.9000000000000005e-27   NR WP_076982493.1 2360 g6041 i0 48.8 10.0026315789474 127 64 99.5 1 2 379 314 440 WP_076982493.1 FG-GAP-like repeat-containing protein, partial [Bathymodiolus thermophilus thioautotrophic gill symbiont] diamond 3801 115 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Bathymodiolus thermophilus thioautotrophic gill symbiont

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;