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contig_metadata

18 rows where bioproject = "PRJNA674308", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 18 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 18 ✖

bioproject 1

  • PRJNA674308 · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1920881 1920881 PRJNA674308_P_NODE_36122_length_169_cov_0.866667_g35887_i0 PRJNA674308 36122 169 0.866667 1.46466723 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.004   NTclustered gi|687022642|emb|LM525556.1| 174720 g35887 i0 100 0.171597633136095 29 0 17 0 2 30 256364 256336 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000002 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
14673677 14673677 PRJNA674308_P_NODE_21072_length_215_cov_1.518072_g20837_i0 PRJNA674308 21072 215 1.518072 3.2638548 Strongyloides ratti 34506 Nematoda Nematoda 102 1.86e-17   NTclustered gi|1376146209|ref|XM_024653666.1| 34506 g20837 i0 84.466 0.92093023255814 103 16 48 0 1 103 1139 1241 Strongyloides ratti AP-47 (SRAE_2000258100), partial mRNA blastn 198 102 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
15947288 15947288 PRJNA674308_P_NODE_19073_length_224_cov_1.782857_g18838_i0 PRJNA674308 19073 224 1.782857 3.99359968 Caenorhabditis briggsae 6238 Nematoda Nematoda 220 5.16e-53   NTclustered gi|2158424922|ref|XM_045237347.1| 6238 g18838 i0 84.444 4.12053571428571 225 33 100 2 1 224 1930 2153 Caenorhabditis briggsae Protein CBR-EFT-2 (Cbr-eft-2), partial mRNA blastn 923 220 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
15947372 15947372 PRJNA674308_P_NODE_28013_length_190_cov_1.475177_g27778_i0 PRJNA674308 28013 190 1.475177 2.8028363 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 100 5.75e-17   NTclustered gi|150982147|gb|EF634662.1| 452809 g27778 i0 85 30.7947368421053 100 13 52 2 55 153 300 398 Pristionchus sp. 15 RS5229 large subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 5851 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
18497022 18497022 PRJNA674308_P_NODE_21235_length_214_cov_1.890909_g21000_i0 PRJNA674308 21235 214 1.890909 4.04654526 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.019   NTclustered gi|687865626|emb|LK927781.1| 6239 g21000 i0 100 0.261682242990654 28 0 13 0 49 76 107754 107781 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000221 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
26638544 26638544 PRJNA674308_P_NODE_27961_length_190_cov_1.475177_g27726_i0 PRJNA674308 27961 190 1.475177 2.8028363 Bursaphelenchus okinawaensis 465554 Nematoda Nematoda 67.4 3.71e-11   NR CAD5207711.1 465554 g27726 i0 54.5 8.49473684210526 66 21 96.3 2 1 183 364 425 CAD5207711.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 1614 67.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis
26701757 26701757 PRJNA674308_P_NODE_28941_length_187_cov_2.137681_g28706_i0 PRJNA674308 28941 187 2.137681 3.99746347 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 43.5 0.00907   NR CAD5212124.1 6326 g28706 i0 51.3 2.06951871657754 39 19 62.6 0 146 30 37 75 CAD5212124.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 387 43.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
27745426 27745426 PRJNA674308_P_NODE_33484_length_175_cov_1.579365_g33249_i0 PRJNA674308 33484 175 1.579365 2.76388875 Enterobius vermicularis 51028 Nematoda Nematoda 42.7 0.0153   NR VDD88118.1 51028 g33249 i0 48.7 0.668571428571429 39 19 65.1 1 135 22 487 525 VDD88118.1 unnamed protein product [Enterobius vermicularis] diamond 117 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
27902854 27902854 PRJNA674308_P_NODE_33745_length_174_cov_1.664000_g33510_i0 PRJNA674308 33745 174 1.664 2.89536 Caenorhabditis auriculariae 2777116 Nematoda Nematoda 55.1 6.03e-7   NR CAD6186662.1 2777116 g33510 i0 69.4 0.620689655172414 36 11 62.1 0 37 144 114 149 CAD6186662.1 unnamed protein product [Caenorhabditis auriculariae] diamond 108 55.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis auriculariae
29702372 29702372 PRJNA674308_P_NODE_17350_length_234_cov_0.935135_g17115_i0 PRJNA674308 17350 234 0.935135 2.1882159 Heterodera trifolii 157864 Nematoda Nematoda 42.7 0.0318   NR KAL3105606.1 157864 g17115 i0 40.4 0.730769230769231 57 29 73.1 2 193 23 21 72 KAL3105606.1 hypothetical protein niasHT_021709 [Heterodera trifolii] diamond 171 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
29987037 29987037 PRJNA674308_P_NODE_54091_length_162_cov_0.911504_g53856_i0 PRJNA674308 54091 162 0.911504 1.47663648 Meloidogyne enterolobii 390850 Nematoda Nematoda 46.6 5.36e-4   NR CAD2176895.1 390850 g53856 i0 63.9 1.96296296296296 36 12 66.7 1 109 2 152 186 CAD2176895.1 unnamed protein product [Meloidogyne enterolobii] diamond 318 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
30050037 30050037 PRJNA674308_P_NODE_45491_length_165_cov_0.896552_g45256_i0 PRJNA674308 45491 165 0.896552 1.4793108 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 64.3 3.05e-10   NR KAE9554736.1 2598192 g45256 i0 51.9 1.96363636363636 54 26 98.2 0 164 3 48 101 KAE9554736.1 hypothetical protein FO519_002064 [Halicephalobus sp. NKZ332] diamond 324 64.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
30176487 30176487 PRJNA674308_P_NODE_34132_length_173_cov_1.677419_g33897_i0 PRJNA674308 34132 173 1.677419 2.90193487 Dracunculus medinensis 318479 Nematoda Nematoda 42 0.0268   NR VDN60194.1 318479 g33897 i0 34 0.919075144508671 53 35 91.9 0 172 14 146 198 VDN60194.1 unnamed protein product [Dracunculus medinensis] diamond 159 42 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Dracunculidae Dracunculus Dracunculus medinensis
30239809 30239809 PRJNA674308_P_NODE_7692_length_343_cov_1.557823_g7457_i0 PRJNA674308 7692 343 1.557823 5.34333289 Caenorhabditis brenneri 135651 Nematoda Nematoda 110 2.82e-25   NR EGT51377.1 135651 g7457 i0 48.2 4.89795918367347 112 50 98 3 3 338 967 1070 EGT51377.1 hypothetical protein CAEBREN_01368 [Caenorhabditis brenneri] diamond 1680 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
30410000 30410000 PRJNA674308_P_NODE_32253_length_178_cov_1.612403_g32018_i0 PRJNA674308 32253 178 1.612403 2.87007734 Metazoa 33208 Nematoda Nematoda 45.4 0.00167   NR PIC39561.1 1611254 g32018 i0 36.1 7.23033707865169 61 33 94.4 2 170 3 53 112 PIC39561.1 hypothetical protein B9Z55_011211 [Caenorhabditis nigoni] diamond 1287 45.8 0.991266375545852 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis nigoni
31294337 31294337 PRJNA674308_P_NODE_21255_length_214_cov_1.842424_g21020_i0 PRJNA674308 21255 214 1.842424 3.94278736 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 63.2 1.41e-9   NR EPB80284.1 53326 g21020 i0 46.4 5.81775700934579 69 35 96.7 1 2 208 157 223 EPB80284.1 hypothetical protein ANCCEY_00686 [Ancylostoma ceylanicum] diamond 1245 63.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum
31895359 31895359 PRJNA674308_P_NODE_41357_length_167_cov_0.881356_g41122_i0 PRJNA674308 41357 167 0.881356 1.47186452 Metazoa 33208 Nematoda Nematoda 80.5 6.55e-16   NR EFO82428.1 31234 g41122 i0 79.6 20.3712574850299 54 11 97 0 2 163 410 463 EFO82428.1 CRE-HSP-3 protein [Caenorhabditis remanei] diamond 3402 80.9 0.995055624227441 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
32874707 32874707 PRJNA674308_P_NODE_22120_length_211_cov_1.277778_g21885_i0 PRJNA674308 22120 211 1.277778 2.69611158 Metazoa 33208 Nematoda Nematoda 43.1 0.018   NR KAK0396201.1 289476 g21885 i0 81.8 0.938388625592417 22 4 31.3 0 1 66 422 443 KAK0396201.1 hypothetical protein QR680_001619 [Steinernema hermaphroditum] diamond 198 43.5 0.990804597701149 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema hermaphroditum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;