RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA674308", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 4 ✖

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA674308 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4472617 4472617 PRJNA674308_P_NODE_17924_length_230_cov_2.011050_g17689_i0 PRJNA674308 17924 230 2.01105 4.625415 Holomastigotes sp. 3086161 Parabasalia other_Eukaryota 56.5 0.002   NTclustered gi|2637867513|gb|OR995878.1| 3086161 g17689 i0 100 0.508695652173913 30 0 13 0 3 32 2856 2885 Holomastigotes sp. clone Hsjo_Para28S_sq46sz39 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 117 56.5 1 Eukaryota Metamonada   Parabasalia   Spirotrichonymphida Holomastigotoididae Holomastigotes Holomastigotes sp.
14673931 14673931 PRJNA674308_P_NODE_50572_length_163_cov_0.912281_g50337_i0 PRJNA674308 50572 163 0.912281 1.48701803 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 54.7 0.004   NTclustered gi|2806465923|ref|XM_068506339.1| 1144522 g50337 i0 100 0.177914110429448 29 0 18 0 113 141 3774 3802 Tritrichomonas foetus uncharacterized protein (TRFO_28716), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
29702392 29702392 PRJNA674308_P_NODE_43790_length_166_cov_0.888889_g43555_i0 PRJNA674308 43790 166 0.888889 1.47555574 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 46.6 2.65e-4   NR XP_068369705.1 1144522 g43555 i0 46 0.903614457831325 50 27 90.4 0 15 164 24 73 XP_068369705.1 uncharacterized protein TRFO_13176 [Tritrichomonas foetus] diamond 150 46.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31820071 31820071 PRJNA674308_P_NODE_2317_length_647_cov_2.622074_g2097_i0 PRJNA674308 2317 647 2.622074 16.96481878 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 75.1 8.07e-12   NR XP_067774481.1 135588 g2097 i0 26.3 0.862442040185471 186 131 86.2 2 593 36 216 395 XP_067774481.1 Pumilio-family RNA binding repeat containing protein [Histomonas meleagridis] diamond 558 75.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;