RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA674308", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA674308 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26765308 26765308 PRJNA674308_P_NODE_4041_length_477_cov_2.455607_g3807_i0 PRJNA674308 4041 477 2.455607 11.71324539 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 58.2 4.11e-7   NR HOJ36617.1 2049428 g3807 i0 35.2 0.553459119496855 88 57 55.3 0 13 276 88 175 HOJ36617.1 50S ribosomal protein L10 [Ignavibacteriales bacterium] diamond 264 58.2 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
27472939 27472939 PRJNA674308_P_NODE_19303_length_223_cov_1.494253_g19068_i0 PRJNA674308 19303 223 1.494253 3.33218419 Bacteria 2 Bacteria Bacteria 46.6 0.00123   NR MBI5402232.1 2026749 g19068 i0 40 1.9372197309417 70 29 90.1 3 212 12 413 472 MBI5402232.1 T9SS type A sorting domain-containing protein [Ignavibacteriota bacterium] diamond 432 46.6 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
31073233 31073233 PRJNA674308_P_NODE_17155_length_235_cov_1.118280_g16920_i0 PRJNA674308 17155 235 1.11828 2.627958 Bacteria 2 Bacteria Bacteria 44.7 0.00695   NR MCB0711030.1 2026749 g16920 i0 35.6 4.14893617021277 73 43 88.1 1 27 233 610 682 MCB0711030.1 hypothetical protein [Ignavibacteriota bacterium] diamond 975 45.1 0.991130820399113 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
32041704 32041704 PRJNA674308_P_NODE_30898_length_182_cov_1.172932_g30663_i0 PRJNA674308 30898 182 1.172932 2.13473624 Melioribacteraceae bacterium 2614255 Bacteria Bacteria 43.1 0.0122   NR MBZ0183024.1 2614255 g30663 i0 51 1.54945054945055 51 23 84.1 1 177 25 405 453 MBZ0183024.1 alanine--tRNA ligase [Melioribacteraceae bacterium] diamond 282 43.1 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae   Melioribacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;