RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA674050" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA674050 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21045874 21045874 PRJNA674050_P_NODE_137_length_1802_cov_14.569693_g82_i0 PRJNA674050 137 1802 14.569693 262.54586786 Spirochaetota bacterium 2202144 Bacteria Bacteria 143 1.07e-28   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g82 i0 81.461 8.54051054384018 178 30 10 3 743 918 74549 74373 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 15390 143 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
24870191 24870191 PRJNA674050_P_NODE_320_length_1302_cov_18.051261_g82_i4 PRJNA674050 320 1302 18.051261 235.02741822 Spirochaetota bacterium 2202144 Bacteria Bacteria 143 7.680000000000001e-29   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g82 i4 81.461 18.7726574500768 178 30 14 3 240 415 74549 74373 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 24442 143 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
26998627 26998627 PRJNA674050_P_NODE_40042_length_242_cov_0.905325_g39839_i0 PRJNA674050 40042 242 0.905325 2.1908865 Pseudomonadati 3379134 Bacteria Bacteria 67 2.73e-11   NR TXG86432.1 2202144 g39839 i0 52.8 1.83471074380165 53 25 65.7 0 166 8 2 54 TXG86432.1 MAG: hypothetical protein E6R13_00420 [Spirochaetota bacterium] diamond 444 67 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;