RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA674050" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA674050 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23596266 23596266 PRJNA674050_P_NODE_159_length_1720_cov_9.840923_g82_i2 PRJNA674050 159 1720 9.840923 169.2638756 Hyaloperonospora arabidopsidis 272952 SAR_Eukaryotes SAR_Eukaryotes 159 1.01e-33   NTclustered gi|2248512796|ref|NC_063789.1| 272952 g82 i2 72.266 10.621511627907 631 136 36 29 680 1294 620 1227 Hyaloperonospora arabidopsidis isolate Noks1 mitochondrion, complete genome blastn 18269 159 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora arabidopsidis
24869606 24869606 PRJNA674050_P_NODE_160_length_1717_cov_8.333942_g82_i3 PRJNA674050 160 1717 8.333942 143.09378414 Hyaloperonospora arabidopsidis 272952 SAR_Eukaryotes SAR_Eukaryotes 159 1.01e-33   NTclustered gi|2248512796|ref|NC_063789.1| 272952 g82 i3 72.266 10.6400698893419 631 136 36 29 424 1038 1227 620 Hyaloperonospora arabidopsidis isolate Noks1 mitochondrion, complete genome blastn 18269 159 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora arabidopsidis
29513126 29513126 PRJNA674050_P_NODE_19610_length_260_cov_1.213904_g19407_i0 PRJNA674050 19610 260 1.213904 3.1561504 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 58.9 9.32e-8   NR KAH9117437.1 100861 g19407 i0 38.4 2.97692307692308 86 52 98.1 1 257 3 496 581 KAH9117437.1 hypothetical protein LEN26_012697 [Aphanomyces euteiches] diamond 774 58.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;