RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA674050", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Viruses · 12 ✖

tax_phylum 1

  • Kitrinoviricota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA674050 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2441608 2441608 PRJNA674050_P_NODE_13302_length_282_cov_4.583732_g13099_i0 PRJNA674050 13302 282 4.583732 12.92612424 Tobamovirus 12234 Viruses Viruses 521 1.6499999999999996e-143   NTclustered gi|2837380181|gb|PP099897.1| 1761477 g13099 i0 100 100 282 0 100 0 1 282 3753 3472 Tomato brown rugose fruit virus isolate NPPO-NL 36648757, complete genome blastn 28200 521 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum
7544257 7544257 PRJNA674050_P_NODE_6046_length_335_cov_1.748092_g5843_i0 PRJNA674050 6046 335 1.748092 5.8561082 Potexvirus 12176 Viruses Viruses 619 6.91e-173   NTclustered gi|2675378618|gb|PP116314.1| 112229 g5843 i0 100 86.044776119403 335 0 100 0 1 335 2627 2293 MAG: Pepino mosaic virus isolate 7452_PepMV, complete genome blastn 28825 619 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
11369927 11369927 PRJNA674050_P_NODE_6769_length_327_cov_1.342520_g6566_i0 PRJNA674050 6769 327 1.34252 4.3900404 Potexvirus 12176 Viruses Viruses 599 8.759999999999997e-167   NTclustered gi|375808845|gb|JN835466.1| 112229 g6566 i0 99.694 58.4709480122324 327 1 100 0 1 327 779 453 Pepino mosaic virus strain CH2, complete genome blastn 19120 599 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
11369936 11369936 PRJNA674050_P_NODE_8789_length_309_cov_1.317797_g8586_i0 PRJNA674050 8789 309 1.317797 4.07199273 Potexvirus 12176 Viruses Viruses 558 1.39e-154   NTclustered gi|2675378618|gb|PP116314.1| 112229 g8586 i0 99.351 56.831715210356 308 2 99 0 2 309 3036 2729 MAG: Pepino mosaic virus isolate 7452_PepMV, complete genome blastn 17561 558 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
13398608 13398608 PRJNA674050_P_NODE_91_length_2022_cov_3.617753_g53_i0 PRJNA674050 91 2022 3.617753 73.15096566 Tobamovirus fructirugosum 3432872 Viruses Viruses 3718 0   NTclustered gi|2201445642|gb|OM515246.1| 1761477 g53 i0 99.852 100 2022 3 100 0 1 2022 3466 1445 Tomato brown rugose fruit virus isolate 39986364, complete genome blastn 202200 3718 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum
14673449 14673449 PRJNA674050_P_NODE_552_length_957_cov_7.289593_g397_i0 PRJNA674050 552 957 7.289593 69.76140501 Tobamovirus fructirugosum 3432872 Viruses Viruses 1768 0   NTclustered gi|2201445642|gb|OM515246.1| 1761477 g397 i0 100 100 957 0 100 0 1 957 4788 5744 Tomato brown rugose fruit virus isolate 39986364, complete genome blastn 95700 1768 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum
15947145 15947145 PRJNA674050_P_NODE_793_length_780_cov_6.454031_g617_i0 PRJNA674050 793 780 6.454031 50.3414418 Tobamovirus fructirugosum 3432872 Viruses Viruses 1441 0   NTclustered gi|2837380407|gb|PP099942.1| 1761477 g617 i0 100 100 780 0 100 0 1 780 4496 3717 Tomato brown rugose fruit virus isolate NPPO-NL 41927291, complete genome blastn 78000 1441 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum
19018048 19018048 PRJNA674050_P_NODE_395_length_1160_cov_2.668813_g266_i0 PRJNA674050 395 1160 2.668813 30.9582308 Tobamovirus 12234 Viruses Viruses 2141 0   NTclustered gi|2837380407|gb|PP099942.1| 1761477 g266 i0 100 99.9137931034483 1159 0 99 0 1 1159 230 1388 Tomato brown rugose fruit virus isolate NPPO-NL 41927291, complete genome blastn 115900 2141 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum
24118202 24118202 PRJNA674050_P_NODE_1139_length_633_cov_6.496429_g945_i0 PRJNA674050 1139 633 6.496429 41.12239557 Tobamovirus 12234 Viruses Viruses 1170 0   NTclustered gi|2837380407|gb|PP099942.1| 1761477 g945 i0 100 100 633 0 100 0 1 633 5714 6346 Tomato brown rugose fruit virus isolate NPPO-NL 41927291, complete genome blastn 63300 1170 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum
25392832 25392832 PRJNA674050_P_NODE_7920_length_316_cov_1.275720_g7717_i0 PRJNA674050 7920 316 1.27572 4.0312752 Potexvirus 12176 Viruses Viruses 582 8.489999999999998e-162   NTclustered gi|2675378618|gb|PP116314.1| 112229 g7717 i0 100 57.8101265822785 315 0 99 0 2 316 1689 1375 MAG: Pepino mosaic virus isolate 7452_PepMV, complete genome blastn 18268 582 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
25392835 25392835 PRJNA674050_P_NODE_8640_length_310_cov_1.565401_g8437_i0 PRJNA674050 8640 310 1.565401 4.8527431 Potexvirus 12176 Viruses Viruses 573 4.999999999999998e-159   NTclustered gi|2675378618|gb|PP116314.1| 112229 g8437 i0 100 100 310 0 100 0 1 310 5061 4752 MAG: Pepino mosaic virus isolate 7452_PepMV, complete genome blastn 31000 573 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
31167612 31167612 PRJNA674050_P_NODE_3815_length_377_cov_1.493421_g3612_i0 PRJNA674050 3815 377 1.493421 5.63019717 Carlavirus 12163 Viruses Viruses 193 2.6099999999999998e-54   NR WOL52747.1 1092564 g3612 i0 78.4 1.9893899204244 125 27 99.5 0 3 377 285 409 WOL52747.1 replicase [Cucumber vein-clearing virus] diamond 750 193 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus cucumis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;