RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA674050" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA674050 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
643831 643831 PRJNA674050_P_NODE_29521_length_248_cov_0.874286_g29318_i0 PRJNA674050 29521 248 0.874286 2.16822928 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 154 5.98e-33   NTclustered gi|2874253978|emb|OY970303.1| 412054 g29318 i0 89.344 2.19354838709677 122 13 49 0 50 171 5682898 5682777 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 544 154 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
3194347 3194347 PRJNA674050_P_NODE_17923_length_265_cov_1.614583_g17720_i0 PRJNA674050 17923 265 1.614583 4.27864495 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 479 9.38e-131   NTclustered gi|2874253728|emb|OY969570.1| 412054 g17720 i0 99.245 86.3132075471698 265 2 100 0 1 265 172312 172576 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 22873 479 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
22320688 22320688 PRJNA674050_P_NODE_1438_length_559_cov_3.390947_g1240_i0 PRJNA674050 1438 559 3.390947 18.95539373 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 616 1.5599999999999994e-171   NTclustered gi|2107953857|gb|CP070792.1| 2026742 g1240 i0 86.842 184.976744186047 570 51 100 18 1 559 1095938 1095382 MAG: Gemmatimonadetes bacterium isolate bin1440 chromosome blastn 103402 616 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
22321062 22321062 PRJNA674050_P_NODE_25018_length_251_cov_0.865169_g24815_i0 PRJNA674050 25018 251 0.865169 2.17157419 Longimicrobium 1804994 Bacteria Bacteria 134 2.53e-36   NR CAA9356552.1 203437 g24815 i0 73.5 2.95219123505976 83 22 99.2 0 2 250 174 256 CAA9356552.1 MAG: Glyoxalase family protein [uncultured Gemmatimonadota bacterium] diamond 741 135 0.992592592592593 Bacteria FCB group Pseudomonadati Gemmatimonadota         uncultured Gemmatimonadota bacterium
27599381 27599381 PRJNA674050_P_NODE_23624_length_252_cov_0.865922_g23421_i0 PRJNA674050 23624 252 0.865922 2.18212344 Bacteria 2 Bacteria Bacteria 103 1.87e-25   NR MBS1240794.1 2026742 g23421 i0 80.3 5.80952380952381 61 12 72.6 0 8 190 128 188 MBS1240794.1 hypothetical protein [Gemmatimonadota bacterium] diamond 1464 103 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29355535 29355535 PRJNA674050_P_NODE_39109_length_242_cov_0.923077_g38906_i0 PRJNA674050 39109 242 0.923077 2.23384634 Longimicrobium sp. 2029185 Bacteria Bacteria 120 2.7599999999999996e-31   NR HEX8212551.1 2029185 g38906 i0 78.5 0.979338842975207 79 17 97.9 0 6 242 113 191 HEX8212551.1 hypothetical protein [Longimicrobium sp.] diamond 237 120 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;