RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA674050", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 12 ✖

tax_kingdom 1

  • Pseudomonadati · 12 ✖

bioproject 1

  • PRJNA674050 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1920538 1920538 PRJNA674050_P_NODE_5662_length_341_cov_0.962687_g5459_i0 PRJNA674050 5662 341 0.962687 3.28276267 Thermodesulfobacteriota 200940 Bacteria Bacteria 225 2.19e-71   NR MBF0235920.1 2006184 g5459 i0 93.8 7.95307917888563 113 7 99.4 0 341 3 129 241 MBF0235920.1 site-specific DNA-methyltransferase [Desulfamplus sp.] diamond 2712 225 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfamplus Desulfamplus sp.
3194593 3194593 PRJNA674050_P_NODE_2443_length_439_cov_3.002732_g2240_i0 PRJNA674050 2443 439 3.002732 13.18199348 Thermodesulfobacterium commune 1741 Bacteria Bacteria 298 4.94e-76   NTclustered gi|668351138|gb|CP008796.1| 289377 g2240 i0 86.594 57.8382687927107 276 30 63 5 165 439 1298589 1298858 Thermodesulfobacterium commune DSM 2178, complete genome blastn 25391 298 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermodesulfobacterium Thermodesulfobacterium commune
8297273 8297273 PRJNA674050_P_NODE_30827_length_247_cov_0.890805_g30624_i0 PRJNA674050 30827 247 0.890805 2.20028835 Nitratidesulfovibrio liaohensis 2604158 Bacteria Bacteria 412 8.89e-111   NTclustered gi|2575677524|gb|CP133659.1| 2604158 g30624 i0 96.761 1.80566801619433 247 8 100 0 1 247 2830168 2829922 Nitratidesulfovibrio liaohensis strain KPS chromosome, complete genome blastn 446 412 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio liaohensis
12122947 12122947 PRJNA674050_P_NODE_22830_length_252_cov_0.871508_g22627_i0 PRJNA674050 22830 252 0.871508 2.19620016 Nitratidesulfovibrio liaohensis 2604158 Bacteria Bacteria 346 9.36e-91   NTclustered gi|2575677524|gb|CP133659.1| 2604158 g22627 i0 92.857 1.85714285714286 238 17 94 0 1 238 3414109 3413872 Nitratidesulfovibrio liaohensis strain KPS chromosome, complete genome blastn 468 346 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio liaohensis
18496689 18496689 PRJNA674050_P_NODE_39895_length_242_cov_0.911243_g39692_i0 PRJNA674050 39895 242 0.911243 2.20520806 Nitratidesulfovibrio liaohensis 2604158 Bacteria Bacteria 281 2.55e-71   NTclustered gi|2575677524|gb|CP133659.1| 2604158 g39692 i0 91.262 1.71900826446281 206 18 85 0 1 206 1455146 1455351 Nitratidesulfovibrio liaohensis strain KPS chromosome, complete genome blastn 416 281 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio liaohensis
27030386 27030386 PRJNA674050_P_NODE_3462_length_388_cov_3.269841_g3259_i0 PRJNA674050 3462 388 3.269841 12.68698308 root 1 Root_unresolved Root_unresolved 47.4 0.0037   NR WP_092161253.1 246191 g3259 i0 37.3 2.61340206185567 75 44 55.7 1 221 6 74 148 WP_092161253.1 PhoH family protein [Maridesulfovibrio ferrireducens] diamond 1014 47.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Maridesulfovibrio Maridesulfovibrio ferrireducens
27524127 27524127 PRJNA674050_P_NODE_24063_length_251_cov_0.876404_g23860_i0 PRJNA674050 24063 251 0.876404 2.19977404 Desulfohalobiaceae bacterium 2683721 Bacteria Bacteria 94.7 1.7400000000000003e-21   NR MEF8942476.1 2683721 g23860 i0 86.5 0.621513944223108 52 7 62.2 0 3 158 43 94 MEF8942476.1 1-deoxy-D-xylulose-5-phosphate synthase N-terminal domain-containing protein [Desulfohalobiaceae bacterium] diamond 156 94.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae   Desulfohalobiaceae bacterium
27808532 27808532 PRJNA674050_P_NODE_824_length_762_cov_5.088534_g646_i0 PRJNA674050 824 762 5.088534 38.77462908 Smithella sp. 2053614 Bacteria Bacteria 76.3 7.68e-14   NR MFA5323714.1 2053614 g646 i0 42.3 0.755905511811024 97 49 37 4 536 255 5 97 MFA5323714.1 hypothetical protein [Smithella sp.] diamond 576 76.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp.
28945232 28945232 PRJNA674050_P_NODE_12168_length_288_cov_0.911628_g11965_i0 PRJNA674050 12168 288 0.911628 2.62548864 Desulfohalobiaceae bacterium 2683721 Bacteria Bacteria 70.5 9.7e-12   NR MCF8030237.1 2683721 g11965 i0 84.2 0.395833333333333 38 6 39.6 0 283 170 352 389 MCF8030237.1 alanine transaminase [Desulfohalobiaceae bacterium] diamond 114 70.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae   Desulfohalobiaceae bacterium
29197709 29197709 PRJNA674050_P_NODE_26349_length_250_cov_0.870056_g26146_i0 PRJNA674050 26349 250 0.870056 2.17514 Geobacter sp. 46610 Bacteria Bacteria 45.4 0.00444   NR MSM40314.1 46610 g26146 i0 35.7 0.84 70 35 81.6 2 10 213 165 226 MSM40314.1 methyltransferase domain-containing protein [Geobacter sp.] diamond 210 45.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp.
29765722 29765722 PRJNA674050_P_NODE_2351_length_445_cov_2.680108_g2148_i0 PRJNA674050 2351 445 2.680108 11.9264806 Desulfobulbus sp. 895 Bacteria Bacteria 77.8 6.46e-15   NR MDD2462441.1 895 g2148 i0 50.6 0.546067415730337 81 39 54.6 1 72 314 74 153 MDD2462441.1 hypothetical protein [Desulfobulbus sp.] diamond 243 77.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus sp.
32622743 32622743 PRJNA674050_P_NODE_24020_length_251_cov_0.876404_g23817_i0 PRJNA674050 24020 251 0.876404 2.19977404 Pseudomonadati 3379134 Bacteria Bacteria 119 6.41e-29   NR WP_196772829.1 2661613 g23817 i0 69.5 2.96414342629482 82 25 98 0 249 4 204 285 WP_196772829.1 TonB-dependent receptor domain-containing protein [Pseudodesulfovibrio alkaliphilus] diamond 744 119 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio alkaliphilus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;