RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA674050", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA674050 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26923629 26923629 PRJNA674050_P_NODE_35362_length_244_cov_0.912281_g35159_i0 PRJNA674050 35362 244 0.912281 2.22596564 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 54.7 3.14e-7   NR PZP53841.1 349221 g35159 i0 59.5 0.516393442622951 42 17 51.6 0 243 118 76 117 PZP53841.1 MAG: hypothetical protein DI586_10615 [Micavibrio aeruginosavorus] diamond 126 54.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
28155784 28155784 PRJNA674050_P_NODE_30505_length_247_cov_0.896552_g30302_i0 PRJNA674050 30505 247 0.896552 2.21448344 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 88.6 1.06e-19   NR HXH75989.1 2081706 g30302 i0 53.7 0.995951417004049 82 32 99.6 1 2 247 65 140 HXH75989.1 Hsp20/alpha crystallin family protein [Bacteriovoracaceae bacterium] diamond 246 88.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29418436 29418436 PRJNA674050_P_NODE_24229_length_251_cov_0.876404_g24026_i0 PRJNA674050 24229 251 0.876404 2.19977404 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 92.8 1.17e-21   NR NCN95280.1 2053517 g24026 i0 55.4 0.99203187250996006 83 37 99.2 0 250 2 3 85 NCN95280.1 DUF2203 family protein [Bdellovibrionales bacterium] diamond 249 92.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;