RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA674050" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 11 ✖

bioproject 1

  • PRJNA674050 · 11 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3194620 3194620 PRJNA674050_P_NODE_2523_length_434_cov_2.631579_g2320_i0 PRJNA674050 2523 434 2.631579 11.42105286 Leptotrichia wadei 157687 Bacteria Bacteria 797 0   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g2320 i0 99.77 557.896313364055 434 1 100 0 1 434 1757212 1756779 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 242127 797 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
4994561 4994561 PRJNA674050_P_NODE_13104_length_283_cov_2.366667_g12901_i0 PRJNA674050 13104 283 2.366667 6.69766761 root 1 Root_unresolved Root_unresolved 507 4.64e-139   NTclustered gi|285798177|gb|GU408159.1| 860 g12901 i0 98.94 139.992932862191 283 3 100 0 1 283 38 320 Fusobacterium periodonticum clone DP015 16S ribosomal RNA gene, partial sequence blastn 39618 512 0.990234375 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
4994583 4994583 PRJNA674050_P_NODE_17544_length_266_cov_2.575130_g17341_i0 PRJNA674050 17544 266 2.57513 6.8498458 Fusobacterium 848 Bacteria Bacteria 492 1.2099999999999999e-134   NTclustered gi|2446175567|gb|CP117964.1| 851 g17341 i0 100 490.503759398496 266 0 100 0 1 266 2087690 2087425 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 130474 492 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
4994592 4994592 PRJNA674050_P_NODE_19364_length_260_cov_2.427807_g19161_i0 PRJNA674050 19364 260 2.427807 6.3122982 Fusobacterium 848 Bacteria Bacteria 481 2.55e-131   NTclustered gi|2573686249|gb|CP133474.1| 851 g19161 i0 100 481.376923076923 260 0 100 0 1 260 322174 321915 Fusobacterium nucleatum strain LMG 13131 chromosome, complete genome blastn 125158 481 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
7023106 7023106 PRJNA674050_P_NODE_6386_length_331_cov_1.612403_g6183_i0 PRJNA674050 6386 331 1.612403 5.33705393 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 579 1.1599999999999996e-160   NTclustered gi|1276709865|gb|CP024700.1| 2663009 g6183 i0 98.187 477.009063444109 331 6 100 0 1 331 2344874 2345204 Fusobacterium pseudoperiodonticum strain KCOM 1263 chromosome, complete genome blastn 157890 579 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
9572191 9572191 PRJNA674050_P_NODE_23488_length_252_cov_0.865922_g23285_i0 PRJNA674050 23488 252 0.865922 2.18212344 Pseudoleptotrichia goodfellowii 157692 Bacteria Bacteria 455 1.49e-123   NTclustered gi|1708563796|dbj|AP019822.1| 157692 g23285 i0 99.206 4.17857142857143 252 2 100 0 1 252 2033372 2033623 Leptotrichia goodfellowii JCM16774 DNA, complete genome blastn 1053 455 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia Pseudoleptotrichia goodfellowii
11369859 11369859 PRJNA674050_P_NODE_2269_length_451_cov_2.621693_g2066_i0 PRJNA674050 2269 451 2.621693 11.82383543 Fusobacterium 848 Bacteria Bacteria 822 0   NTclustered gi|15028908|emb|AJ307974.1| 851 g2066 i0 99.557 422.133037694013 451 2 100 0 1 451 473 23 Fusobacterium nucleatum 23S rRNA gene, strain DSM 20482 blastn 190382 828 0.992753623188406 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
12645599 12645599 PRJNA674050_P_NODE_12190_length_287_cov_2.630841_g11987_i0 PRJNA674050 12190 287 2.630841 7.55051367 Fusobacterium 848 Bacteria Bacteria 531 2.799999999999999e-146   NTclustered gi|2706041172|gb|CP056018.1| 76857 g11987 i0 100 494.020905923345 287 0 100 0 1 287 502453 502739 Fusobacterium polymorphum strain SB006 chromosome, complete genome blastn 141784 531 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
19017950 19017950 PRJNA674050_P_NODE_10955_length_294_cov_1.144796_g10752_i0 PRJNA674050 10955 294 1.144796 3.36570024 Leptotrichia 32067 Bacteria Bacteria 538 1.7199999999999995e-148   NTclustered gi|470484715|ref|NR_076664.1| 40542 g10752 i0 99.66 163.455782312925 294 1 100 0 1 294 167 460 Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence blastn 48056 538 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
19771015 19771015 PRJNA674050_P_NODE_3576_length_385_cov_1.548077_g3373_i0 PRJNA674050 3576 385 1.548077 5.96009645 Leptotrichia wadei 157687 Bacteria Bacteria 645 1.3299999999999995e-180   NTclustered gi|1708575239|dbj|AP019834.1| 157687 g3373 i0 96.899 345.25974025974 387 8 100 3 1 385 1695367 1694983 Leptotrichia wadei JMUB3933 DNA, complete genome blastn 132925 645 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
24870134 24870134 PRJNA674050_P_NODE_30640_length_247_cov_0.890805_g30437_i0 PRJNA674050 30640 247 0.890805 2.20028835 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 457 4.05e-124   NTclustered gi|1276714546|gb|CP024702.1| 2663009 g30437 i0 100 52.6761133603239 247 0 100 0 1 247 864882 864636 Fusobacterium pseudoperiodonticum strain KCOM 1282 chromosome, complete genome blastn 13011 457 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;