RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA674050", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 6 ✖

tax_clade 1

  • Discoba · 6 ✖

bioproject 1

  • PRJNA674050 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1166296 1166296 PRJNA674050_P_NODE_1101_length_644_cov_8.987741_g907_i0 PRJNA674050 1101 644 8.987741 57.88105204 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 917 0   NTclustered gi|2618963742|gb|OR769034.1| 5762 g907 i0 92.308 34.3105590062112 650 42 100 7 1 644 2357 3004 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 22096 918 0.998910675381264 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
1920573 1920573 PRJNA674050_P_NODE_6942_length_325_cov_2.376984_g6739_i0 PRJNA674050 6942 325 2.376984 7.725198 Naegleria jamiesoni 36335 Heterolobosea other_Eukaryota 542 1.49e-149   NTclustered gi|2351573|gb|U80061.1|NJU80061 36335 g6739 i0 99.01 94.4369230769231 303 1 93 2 23 325 69 369 Naegleria jamiesoni 18S ribosomal RNA gene, partial sequence blastn 30692 542 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jamiesoni
1920626 1920626 PRJNA674050_P_NODE_8602_length_310_cov_3.122363_g8399_i0 PRJNA674050 8602 310 3.122363 9.6793253 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 512 1.11e-140   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g8399 i0 96.753 12.7258064516129 308 9 99 1 1 307 3605 3912 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3945 512 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
17744271 17744271 PRJNA674050_P_NODE_41674_length_221_cov_4.918919_g41471_i0 PRJNA674050 41674 221 4.918919 10.87081099 Naegleria 5761 Heterolobosea other_Eukaryota 346 8.020000000000001e-91   NTclustered gi|2618963742|gb|OR769034.1| 5762 g41471 i0 95 10.393665158371 220 11 99 0 2 221 5793 5574 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 2297 346 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
23596070 23596070 PRJNA674050_P_NODE_10419_length_297_cov_1.633929_g10216_i0 PRJNA674050 10419 297 1.633929 4.85276913 Naegleria jamiesoni 36335 Heterolobosea other_Eukaryota 403 6.61e-108   NTclustered gi|2351573|gb|U80061.1|NJU80061 36335 g10216 i0 91.525 98.1784511784512 295 22 99 3 5 297 983 690 Naegleria jamiesoni 18S ribosomal RNA gene, partial sequence blastn 29159 403 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jamiesoni
29367428 29367428 PRJNA674050_P_NODE_24669_length_251_cov_0.870787_g24466_i0 PRJNA674050 24669 251 0.870787 2.18567537 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 149 1.83e-40   NR KAL0483242.1 1008807 g24466 i0 85.5 1.9840637450199201 83 12 99.2 0 250 2 346 428 KAL0483242.1 short-chain specific acyl-CoA dehydrogenase, mitochondrial [Acrasis kona] diamond 498 149 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;