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contig_metadata

22 rows where bioproject = "PRJNA674048" and tax_superkingdom = "Archaea"

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tax_kingdom 2

analysis 2

tax_superkingdom 1

  • Archaea · 22 ✖

tax_clade 1

bioproject 1

  • PRJNA674048 · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4994274 4994274 PRJNA674048_P_NODE_23644_length_181_cov_1.181818_g23441_i0 PRJNA674048 23644 181 1.181818 2.13909058 root 1 Root_unresolved Root_unresolved 335 1.36e-87   NTclustered gi|253971047|gb|GQ249655.1| 29281 g23441 i0 100 99.9889502762431 181 0 100 0 1 181 317 497 Uncultured crenarchaeote clone D06-arc 16S ribosomal RNA gene, partial sequence blastn 18098 335 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
6270001 6270001 PRJNA674048_P_NODE_29445_length_166_cov_0.888889_g29242_i0 PRJNA674048 29445 166 0.888889 1.47555574 Halalkalicoccus 332246 Archaea Archaea 292 7.52e-75   NTclustered gi|507148368|ref|NR_103171.1| 413810 g29242 i0 98.78 178.030120481928 164 2 99 0 3 166 1262 1099 Halalkalicoccus jeotgali strain B3 23S ribosomal RNA gene, complete sequence blastn 29553 292 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
6270036 6270036 PRJNA674048_P_NODE_31645_length_163_cov_0.912281_g31442_i0 PRJNA674048 31645 163 0.912281 1.48701803 Haloarcula 2237 Archaea Archaea 132 1.7e-26   NTclustered gi|343781660|gb|CP002921.1| 634497 g31442 i0 84.733 5.77914110429448 131 20 80 0 30 160 2336111 2336241 Haloarcula hispanica ATCC 33960 chromosome I, complete sequence blastn 942 132 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula hispanica
19017566 19017566 PRJNA674048_P_NODE_14895_length_232_cov_2.841530_g14692_i0 PRJNA674048 14895 232 2.84153 6.5923496 root 1 Root_unresolved Root_unresolved 429 8.2e-116   NTclustered gi|3108087|gb|AF058730.1| 75624 g14692 i0 100 100 232 0 100 0 1 232 481 712 Uncultured crenarchaeote KBSNat20 16S ribosomal RNA gene, partial sequence blastn 23200 429 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote KBSNat20
21045703 21045703 PRJNA674048_P_NODE_30577_length_164_cov_1.808696_g30374_i0 PRJNA674048 30577 164 1.808696 2.96626144 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 303 3.42e-78   NTclustered gi|937513727|gb|CP012850.1| 1353260 g30374 i0 100 19.4024390243902 164 0 100 0 1 164 848071 848234 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 3182 303 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
21568154 21568154 PRJNA674048_P_NODE_27277_length_169_cov_0.866667_g27074_i0 PRJNA674048 27277 169 0.866667 1.46466723 Candidatus Nitrosocosmicus 1826864 Archaea Archaea 313 5.859999999999999e-81   NTclustered gi|937513727|gb|CP012850.1| 1353260 g27074 i0 100 85.3846153846154 169 0 100 0 1 169 847994 847826 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 14430 313 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
22843268 22843268 PRJNA674048_P_NODE_10418_length_291_cov_0.979339_g10215_i0 PRJNA674048 10418 291 0.979339 2.84987649 Halalkalicoccus 332246 Archaea Archaea 483 8.069999999999998e-132   NTclustered gi|507148368|ref|NR_103171.1| 413810 g10215 i0 96.564 77.7938144329897 291 10 100 0 1 291 383 93 Halalkalicoccus jeotgali strain B3 23S ribosomal RNA gene, complete sequence blastn 22638 483 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
25392378 25392378 PRJNA674048_P_NODE_18820_length_204_cov_1.270968_g18617_i0 PRJNA674048 18820 204 1.270968 2.59277472 Archaea 2157 Archaea Archaea 377 2.59e-100   NTclustered gi|315585451|gb|HQ647201.1| 29281 g18617 i0 100 102 204 0 100 0 1 204 62 265 Uncultured crenarchaeote clone Hm5_rock_SK477 16S ribosomal RNA gene, partial sequence blastn 20808 377 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
27207969 27207969 PRJNA674048_P_NODE_24822_length_176_cov_1.834646_g24619_i0 PRJNA674048 24822 176 1.834646 3.22897696 archaeon 1906665 Archaea Archaea 99 2.1099999999999998e-23   NR RYG64625.1 1906665 g24619 i0 77.6 0.988636363636364 58 13 98.9 0 175 2 170 227 RYG64625.1 MAG: 50S ribosomal protein L3, partial [archaeon] diamond 174 99 1 Archaea               archaeon
27883289 27883289 PRJNA674048_P_NODE_29805_length_165_cov_1.793103_g29602_i0 PRJNA674048 29805 165 1.793103 2.95861995 root 1 Root_unresolved Root_unresolved 50.4 2.91e-6   NR WP_048102805.1 2208 g29602 i0 52.2 2.32727272727273 46 22 83.6 0 27 164 3 48 WP_048102805.1 hypothetical protein [Methanosarcina barkeri] diamond 384 50.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri
27934655 27934655 PRJNA674048_P_NODE_27105_length_169_cov_0.866667_g26902_i0 PRJNA674048 27105 169 0.866667 1.46466723 archaeon 1906665 Archaea Archaea 60.8 2.68e-9   NR RYG66559.1 1906665 g26902 i0 82.4 1.57988165680473 34 6 60.4 0 102 1 132 165 RYG66559.1 MAG: elongation factor 1-beta/delta [archaeon] diamond 267 60.8 1 Archaea               archaeon
27997892 27997892 PRJNA674048_P_NODE_31065_length_164_cov_0.904348_g30862_i0 PRJNA674048 31065 164 0.904348 1.48313072 archaeon 1906665 Archaea Archaea 54.7 7.77e-7   NR RYG69087.1 1906665 g30862 i0 61.5 0.713414634146341 39 15 71.3 0 39 155 464 502 RYG69087.1 MAG: hypothetical protein EON64_03605, partial [archaeon] diamond 117 54.7 1 Archaea               archaeon
29229343 29229343 PRJNA674048_P_NODE_22549_length_185_cov_1.529412_g22346_i0 PRJNA674048 22549 185 1.529412 2.8294122 Candidatus Caldarchaeum sp. 2972665 Archaea Archaea 78.2 5.51e-15   NR MEM0462111.1 2972665 g22346 i0 63.9 0.989189189189189 61 21 98.9 1 183 1 450 509 MEM0462111.1 hypothetical protein [Candidatus Caldarchaeum sp.] diamond 183 78.2 1 Archaea   Thermoproteati Nitrososphaerota   Candidatus Caldarchaeales Candidatus Caldarchaeaceae Candidatus Caldarchaeum Candidatus Caldarchaeum sp.
29923904 29923904 PRJNA674048_P_NODE_30371_length_165_cov_0.896552_g30168_i0 PRJNA674048 30371 165 0.896552 1.4793108 archaeon 1906665 Archaea Archaea 59.7 1.33e-8   NR RYH18422.1 1906665 g30168 i0 54 0.909090909090909 50 23 90.9 0 14 163 956 1005 RYH18422.1 MAG: hypothetical protein EON65_27240 [archaeon] diamond 150 59.7 1 Archaea               archaeon
30713611 30713611 PRJNA674048_P_NODE_28554_length_167_cov_0.881356_g28351_i0 PRJNA674048 28554 167 0.881356 1.47186452 archaeon 1906665 Archaea Archaea 103 6.77e-24   NR RYH27824.1 1906665 g28351 i0 87.3 1.97604790419162 55 7 98.8 0 1 165 469 523 RYH27824.1 MAG: acyl-CoA dehydrogenase [archaeon] diamond 330 103 1 Archaea               archaeon
30745271 30745271 PRJNA674048_P_NODE_31614_length_163_cov_0.912281_g31411_i0 PRJNA674048 31614 163 0.912281 1.48701803 archaeon 1906665 Archaea Archaea 71.2 3.45e-13   NR HLD78554.1 1906665 g31411 i0 67.3 0.901840490797546 49 16 90.2 0 162 16 133 181 HLD78554.1 hypothetical protein [archaeon] diamond 147 71.2 1 Archaea               archaeon
30871594 30871594 PRJNA674048_P_NODE_19494_length_200_cov_1.377483_g19291_i0 PRJNA674048 19494 200 1.377483 2.754966 archaeon 1906665 Archaea Archaea 82.4 2.09e-17   NR RYG65124.1 1906665 g19291 i0 84.1 0.66 44 7 66 0 200 69 172 215 RYG65124.1 MAG: 30S ribosomal protein S5 [archaeon] diamond 132 82.4 1 Archaea               archaeon
31661840 31661840 PRJNA674048_P_NODE_32137_length_163_cov_0.912281_g31934_i0 PRJNA674048 32137 163 0.912281 1.48701803 archaeon 1906665 Archaea Archaea 44.3 0.00362   NR MDP2436889.1 1906665 g31934 i0 44.4 0.828220858895706 45 25 82.8 0 11 145 293 337 MDP2436889.1 hypothetical protein [archaeon] diamond 135 44.3 1 Archaea               archaeon
31946531 31946531 PRJNA674048_P_NODE_29497_length_166_cov_0.888889_g29294_i0 PRJNA674048 29497 166 0.888889 1.47555574 Candidatus Poseidoniales archaeon 2163009 Archaea Archaea 94 3.0300000000000003e-21   NR MEK9694268.1 2163009 g29294 i0 77.8 0.975903614457831 54 12 97.6 0 164 3 277 330 MEK9694268.1 hypothetical protein [Candidatus Poseidoniales archaeon] diamond 162 94 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales     Candidatus Poseidoniales archaeon
31978279 31978279 PRJNA674048_P_NODE_19418_length_200_cov_2.721854_g19215_i0 PRJNA674048 19418 200 2.721854 5.443708 Methanobacteriota archaeon 2026739 Archaea Archaea 44.7 0.00452   NR MAQ04991.1 2026739 g19215 i0 39.6 0.795 53 30 79.5 1 186 28 530 580 MAQ04991.1 hypothetical protein [Methanobacteriota archaeon] diamond 159 44.7 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
32041677 32041677 PRJNA674048_P_NODE_32838_length_162_cov_0.920354_g32635_i0 PRJNA674048 32838 162 0.920354 1.49097348 Methanobacteriota archaeon 2026739 Archaea Archaea 100 1.29e-23   NR MCH7660952.1 2026739 g32635 i0 94.2 0.962962962962963 52 3 96.3 0 160 5 190 241 MCH7660952.1 type II glyceraldehyde-3-phosphate dehydrogenase [Methanobacteriota archaeon] diamond 156 100 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
32484772 32484772 PRJNA674048_P_NODE_31919_length_163_cov_0.912281_g31716_i0 PRJNA674048 31919 163 0.912281 1.48701803 archaeon 1906665 Archaea Archaea 48.1 1.53e-4   NR MDP2439624.1 1906665 g31716 i0 39.6 0.975460122699387 53 32 97.5 0 161 3 115 167 MDP2439624.1 hypothetical protein [archaeon] diamond 159 48.1 1 Archaea               archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;