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contig_metadata

33 rows where bioproject = "PRJNA674048" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 33 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA674048 · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
642993 642993 PRJNA674048_P_NODE_19881_length_198_cov_1.046980_g19678_i0 PRJNA674048 19881 198 1.04698 2.0730204 Canis lupus 9612 Chordata Chordata 355 1.17e-93   NTclustered gi|125658997|gb|EF377413.1| 9615 g19678 i0 98.99 14.6868686868687 198 2 100 0 1 198 566 369 Canis familiaris clone CSac26 satellite sequence blastn 2908 355 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
1919205 1919205 PRJNA674048_P_NODE_16942_length_216_cov_1.556886_g16739_i0 PRJNA674048 16942 216 1.556886 3.36287376 Mus musculus 10090 Chordata Chordata 52.8 0.019   NTclustered gi|49615225|gb|AC115787.6| 10090 g16739 i0 100 0.12962962962963 28 0 13 0 167 194 55060 55087 Mus musculus chromosome 16, clone RP23-212P1, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
1919253 1919253 PRJNA674048_P_NODE_22542_length_185_cov_1.529412_g22339_i0 PRJNA674048 22542 185 1.529412 2.8294122 Meleagris gallopavo 9103 Chordata Chordata 337 3.89e-88   NTclustered gi|2721460845|emb|HG999683.4| 9103 g22339 i0 99.459 1029.41621621622 185 1 100 0 1 185 41843766 41843950 Meleagris gallopavo genome assembly, chromosome: Z blastn 190442 337 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
2441189 2441189 PRJNA674048_P_NODE_14002_length_241_cov_1.083333_g13799_i0 PRJNA674048 14002 241 1.083333 2.61083253 Lampetra 13103 Chordata Chordata 54.7 0.006   NTclustered gi|2815005712|emb|OZ078592.2| 7748 g13799 i0 100 1.05809128630705 29 0 12 0 74 102 1260541 1260513 Lampetra fluviatilis genome assembly, chromosome: 24 blastn 255 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
3717715 3717715 PRJNA674048_P_NODE_23803_length_180_cov_1.587786_g23600_i0 PRJNA674048 23803 180 1.587786 2.8580148 root 1 Root_unresolved Root_unresolved 54.7 0.004   NTclustered gi|2805716437|emb|OZ078423.1| 7748 g23600 i0 100 0.961111111111111 29 0 16 0 95 123 4441210 4441238 Lampetra fluviatilis genome assembly, chromosome: 20 blastn 173 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
5746516 5746516 PRJNA674048_P_NODE_16605_length_218_cov_3.266272_g16402_i0 PRJNA674048 16605 218 3.266272 7.12047296 Polypterus senegalus 55291 Chordata Chordata 270 4.89e-68   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g16402 i0 90.385 16.1284403669725 208 17 94 3 13 218 1173 1379 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 3516 270 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
5746541 5746541 PRJNA674048_P_NODE_19185_length_202_cov_1.019608_g18982_i0 PRJNA674048 19185 202 1.019608 2.05960816 Phaenicophaeus curvirostris 33595 Chordata Chordata 137 4.72e-28   NTclustered gi|2852309334|ref|XM_069881719.1| 33595 g18982 i0 90.385 39.1138613861386 104 10 51 0 1 104 293 190 PREDICTED: Phaenicophaeus curvirostris small ribosomal subunit protein uS17 (LOC138734140), mRNA blastn 7901 137 1 Eukaryota Opisthokonta Metazoa Chordata Aves Cuculiformes Cuculidae Phaenicophaeus Phaenicophaeus curvirostris
8296515 8296515 PRJNA674048_P_NODE_9167_length_315_cov_1.406015_g8964_i0 PRJNA674048 9167 315 1.406015 4.42894725 Mus musculus 10090 Chordata Chordata 560 3.96e-155   NTclustered gi|2904934826|gb|PQ737751.1| 10090 g8964 i0 98.73 99.4666666666667 315 4 100 0 1 315 358 44 Mus musculus lncRNA161 lncRNA, complete sequence blastn 31332 560 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
10847271 10847271 PRJNA674048_P_NODE_32669_length_162_cov_0.920354_g32466_i0 PRJNA674048 32669 162 0.920354 1.49097348 Gallus gallus 9031 Chordata Chordata 278 2.04e-70   NTclustered gi|160358550|gb|AC202841.3| 9031 g32466 i0 97.531 308.654320987654 162 4 100 0 1 162 131458 131619 Gallus gallus BAC clone CH261-25J3 from chromosome z, complete sequence blastn 50002 278 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
13397268 13397268 PRJNA674048_P_NODE_31091_length_164_cov_0.904348_g30888_i0 PRJNA674048 31091 164 0.904348 1.48313072 Mus musculus 10090 Chordata Chordata 303 3.42e-78   NTclustered gi|257743036|ref|NM_010699.2| 10090 g30888 i0 100 98.8231707317073 164 0 100 0 1 164 805 968 Mus musculus lactate dehydrogenase A (Ldha), transcript variant 1, mRNA blastn 16207 303 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
15945844 15945844 PRJNA674048_P_NODE_31113_length_164_cov_0.904348_g30910_i0 PRJNA674048 31113 164 0.904348 1.48313072 Rattus norvegicus 10116 Chordata Chordata 303 3.42e-78   NTclustered gi|57670|emb|X62528.1| 10116 g30910 i0 100 98.3536585365854 164 0 100 0 1 164 1010 847 R.rattus mRNA for ribonuclease inhibitor blastn 16130 303 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
18495533 18495533 PRJNA674048_P_NODE_31935_length_163_cov_0.912281_g31732_i0 PRJNA674048 31935 163 0.912281 1.48701803 Meleagris gallopavo 9103 Chordata Chordata 291 2.64e-74   NTclustered gi|2721460913|emb|HG999695.4| 9103 g31732 i0 98.773 2.01226993865031 163 2 100 0 1 163 9298439 9298601 Meleagris gallopavo genome assembly, chromosome: 15 blastn 328 291 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
19017668 19017668 PRJNA674048_P_NODE_22415_length_186_cov_1.145985_g22212_i0 PRJNA674048 22415 186 1.145985 2.1315321 Mus 10088 Chordata Chordata 333 5.069999999999999e-87   NTclustered gi|2415279407|emb|OX389814.1| 10090 g22212 i0 99.454 98.3655913978495 183 1 98 0 1 183 3400 3582 Mus musculus genome assembly, organelle: mitochondrion blastn 18296 333 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
20292563 20292563 PRJNA674048_P_NODE_32896_length_162_cov_0.920354_g32693_i0 PRJNA674048 32896 162 0.920354 1.49097348 Ovis 9935 Chordata Chordata 265 1.5899999999999998e-66   NTclustered gi|2587918875|tpg|BK064708.1| 9940 g32693 i0 96.296 423.697530864198 162 5 100 1 1 162 2400818 2400658 TPA: Ovis aries breed Rambouillet TRA/TRD locus blastn 68639 265 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
22320394 22320394 PRJNA674048_P_NODE_20218_length_196_cov_1.414966_g20015_i0 PRJNA674048 20218 196 1.414966 2.77333336 Hippopotamus amphibius 9833 Chordata Chordata 58.4 3.64e-4   NTclustered gi|2528695967|ref|XM_057737740.1| 575201 g20015 i0 94.595 0.627551020408163 37 2 19 0 10 46 825 861 PREDICTED: Hippopotamus amphibius kiboko RNA-binding protein with multiple splicing 2-like (LOC130854856), mRNA blastn 123 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Hippopotamidae Hippopotamus Hippopotamus amphibius
23595911 23595911 PRJNA674048_P_NODE_18719_length_204_cov_2.774194_g18516_i0 PRJNA674048 18719 204 2.774194 5.65935576 Xenopus tropicalis 8364 Chordata Chordata 56.5 0.001   NTclustered gi|1785334630|ref|XM_031897942.1| 8364 g18516 i0 90.698 1.40686274509804 43 2 21 2 95 136 3531 3490 PREDICTED: Xenopus tropicalis family with sequence similarity 172 member A (fam172a), transcript variant X1, mRNA blastn 287 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
24869219 24869219 PRJNA674048_P_NODE_12600_length_257_cov_1.572115_g12397_i0 PRJNA674048 12600 257 1.572115 4.04033555 Diceros bicornis 9805 Chordata Chordata 56.5 0.002   NTclustered gi|2555147908|ref|XM_058568239.1| 77932 g12397 i0 100 1.69649805447471 30 0 12 0 201 230 324 353 PREDICTED: Diceros bicornis minor sterol regulatory element binding transcription factor 2 (SREBF2), mRNA blastn 436 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Rhinocerotidae Diceros Diceros bicornis
24869327 24869327 PRJNA674048_P_NODE_27020_length_169_cov_0.866667_g26817_i0 PRJNA674048 27020 169 0.866667 1.46466723 Bos taurus 9913 Chordata Chordata 313 5.859999999999999e-81   NTclustered gi|2587647260|ref|XR_009491241.1| 9913 g26817 i0 100 1492.87573964497 169 0 100 0 1 169 5770 5938 PREDICTED: Bos taurus uncharacterized lncRNA (LOC101902458), transcript variant X2, ncRNA blastn 252296 313 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
24869361 24869361 PRJNA674048_P_NODE_31160_length_164_cov_0.904348_g30957_i0 PRJNA674048 31160 164 0.904348 1.48313072 Alectoris rufa 9079 Chordata Chordata 231 1.6399999999999998e-56   NTclustered gi|2919602046|emb|OZ238769.1| 9079 g30957 i0 92.121 285.15243902439 165 12 100 1 1 164 27492666 27492502 Alectoris rufa genome assembly, chromosome: 4 blastn 46765 231 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Alectoris Alectoris rufa
28862019 28862019 PRJNA674048_P_NODE_29588_length_166_cov_0.888889_g29385_i0 PRJNA674048 29588 166 0.888889 1.47555574 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 53.1 2.83e-6   NR XP_039606628.1 55291 g29385 i0 39 6.01807228915663 59 31 97.6 1 163 2 696 754 XP_039606628.1 proprotein convertase subtilisin/kexin type 5b isoform X3 [Polypterus senegalus] diamond 999 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29209592 29209592 PRJNA674048_P_NODE_21089_length_191_cov_3.119718_g20886_i0 PRJNA674048 21089 191 3.119718 5.95866138 Opisthokonta 33154 Chordata Chordata 55.5 9.76e-8   NR XP_019639315.1 7741 g20886 i0 48 3.89528795811518 50 26 78.5 0 181 32 81 130 XP_019639315.1 PREDICTED: profilin-1A-like [Branchiostoma belcheri] diamond 744 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29765714 29765714 PRJNA674048_P_NODE_20591_length_194_cov_1.434483_g20388_i0 PRJNA674048 20591 194 1.434483 2.78289702 Xenopus laevis 8355 Chordata Chordata 42 0.0379   NR XP_018096756.1 8355 g20388 i0 34.3 1.08247422680412 70 34 95.9 5 6 191 938 1003 XP_018096756.1 SCO-spondin isoform X1 [Xenopus laevis] diamond 210 42 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
29797311 29797311 PRJNA674048_P_NODE_26071_length_172_cov_1.121951_g25868_i0 PRJNA674048 26071 172 1.121951 1.92975572 Hymenochirus boettgeri 247094 Chordata Chordata 47.4 3.25e-4   NR KAG8441433.1 247094 g25868 i0 51.9 0.941860465116279 54 25 92.4 1 12 170 647 700 KAG8441433.1 hypothetical protein GDO86_006974 [Hymenochirus boettgeri] diamond 162 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Hymenochirus Hymenochirus boettgeri
30188360 30188360 PRJNA674048_P_NODE_27352_length_169_cov_0.866667_g27149_i0 PRJNA674048 27352 169 0.866667 1.46466723 Metazoa 33208 Chordata Chordata 65.1 1.74e-10   NR XP_039251051.1 7725 g27149 i0 63.4 3.26627218934911 41 15 72.8 0 167 45 877 917 XP_039251051.1 mucin-3A-like [Styela clava] diamond 552 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
30441378 30441378 PRJNA674048_P_NODE_11173_length_278_cov_2.711790_g10970_i0 PRJNA674048 11173 278 2.71179 7.5387762 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 103 2.73e-24   NR MEE6463730.1 8439 g10970 i0 72.6 80.341726618705 62 17 66.9 0 2 187 235 296 MEE6463730.1 hypothetical protein [Ascaphus truei] diamond 22335 104 0.990384615384615 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
30757207 30757207 PRJNA674048_P_NODE_16914_length_216_cov_2.035928_g16711_i0 PRJNA674048 16914 216 2.035928 4.39760448 Metazoa 33208 Chordata Chordata 94.7 1.28e-20   NR KAG2469906.1 55291 g16711 i0 78.3 24.9027777777778 69 15 95.8 0 9 215 839 907 KAG2469906.1 GOGA1 protein, partial [Polypterus senegalus] diamond 5379 94.7 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31262760 31262760 PRJNA674048_P_NODE_11395_length_275_cov_1.827434_g11192_i0 PRJNA674048 11395 275 1.827434 5.0254435 Chordata 7711 Chordata Chordata 45.8 0.00474   NR XP_053575473.1 8345 g11192 i0 69 1.0581818181818201 29 9 31.6 0 110 24 1255 1283 XP_053575473.1 LOW QUALITY PROTEIN: hydrocephalus-inducing protein homolog [Bombina bombina] diamond 291 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
31978280 31978280 PRJNA674048_P_NODE_23878_length_180_cov_1.465649_g23675_i0 PRJNA674048 23878 180 1.465649 2.6381682 Physeter macrocephalus 9755 Chordata Chordata 57 1.46e-7   NR XP_054944300.1 9755 g23675 i0 54.3 0.766666666666667 46 21 76.7 0 170 33 75 120 XP_054944300.1 G-protein coupled receptor 176 isoform X1 [Physeter macrocephalus] diamond 138 57 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Physeter Physeter macrocephalus
32168429 32168429 PRJNA674048_P_NODE_7618_length_355_cov_2.379085_g7415_i0 PRJNA674048 7618 355 2.379085 8.44575175 Hypanus sabinus 79690 Chordata Chordata 72 7.19e-12   NR XP_059816063.1 79690 g7415 i0 38.9 1.6056338028169 95 53 76.1 1 17 286 110 204 XP_059816063.1 uncharacterized protein LOC132387718 [Hypanus sabinus] diamond 570 72 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
32326806 32326806 PRJNA674048_P_NODE_21959_length_188_cov_1.122302_g21756_i0 PRJNA674048 21959 188 1.122302 2.10992776 Ciona intestinalis 7719 Chordata Chordata 56.2 3.11e-7   NR XP_026690802.1 7719 g21756 i0 57.1 0.670212765957447 42 18 67 0 187 62 102 143 XP_026690802.1 neurogenic locus notch homolog protein 1 [Ciona intestinalis] diamond 126 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
32358326 32358326 PRJNA674048_P_NODE_28479_length_167_cov_0.881356_g28276_i0 PRJNA674048 28479 167 0.881356 1.47186452 Cyrtonyx montezumae 9017 Chordata Chordata 61.6 2.9e-9   NR XP_065587235.1 9017 g28276 i0 58 4.65269461077844 50 21 89.8 0 165 16 504 553 XP_065587235.1 LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX34 [Cyrtonyx montezumae] diamond 777 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Odontophoridae Cyrtonyx Cyrtonyx montezumae
32799676 32799676 PRJNA674048_P_NODE_13000_length_252_cov_2.093596_g12797_i0 PRJNA674048 13000 252 2.093596 5.27586192 Erpetoichthys calabaricus 27687 Chordata Chordata 65.9 2.38e-10   NR XP_051791274.1 27687 g12797 i0 48.2 4.94047619047619 83 16 98.8 1 3 251 175 230 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 1245 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
32906142 32906142 PRJNA674048_P_NODE_28460_length_167_cov_0.881356_g28257_i0 PRJNA674048 28460 167 0.881356 1.47186452 Anura 8342 Chordata Chordata 83.6 5.41e-17   NR MEE6520153.1 8439 g28257 i0 65.5 11.8562874251497 55 19 98.8 0 167 3 902 956 MEE6520153.1 hypothetical protein [Ascaphus truei] diamond 1980 84.3 0.991696322657177 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;