RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA674048" and tax_phylum = "Artverviricota"

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tax_superkingdom 1

tax_phylum 1

  • Artverviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA674048 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6270008 6270008 PRJNA674048_P_NODE_29885_length_165_cov_1.741379_g29682_i0 PRJNA674048 29885 165 1.741379 2.87327535 Gammaretrovirus 153135 Viruses Viruses 305 9.59e-79   NTclustered gi|332071|gb|M12997.1|MLVTGRD 11786 g29682 i0 100 174.69696969697 165 0 100 0 1 165 594 758 Moloney murine leukemia virus (M-MuLV) transposon genes and replicating details, partial cds blastn 28825 305 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
12645246 12645246 PRJNA674048_P_NODE_20490_length_194_cov_2.841379_g20287_i0 PRJNA674048 20490 194 2.841379 5.51227526 Gammaretrovirus 153135 Viruses Viruses 326 8.94e-85   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g20287 i0 96.907 91.7938144329897 194 6 100 0 1 194 4289 4096 Moloney murine leukemia virus, complete genome blastn 17808 326 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
22320413 22320413 PRJNA674048_P_NODE_23358_length_182_cov_1.563910_g23155_i0 PRJNA674048 23358 182 1.56391 2.8463162 Gammaretrovirus murleu 3428959 Viruses Viruses 337 3.82e-88   NTclustered gi|18448741|gb|AF462057.1| 11801 g23155 i0 100 100.027472527473 182 0 100 0 1 182 3284 3465 Moloney murine leukemia virus neuropathogenic variant ts1-92b, complete genome blastn 18205 337 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
24117745 24117745 PRJNA674048_P_NODE_11559_length_272_cov_3.269058_g11356_i0 PRJNA674048 11559 272 3.269058 8.89183776 Viruses 10239 Viruses Viruses 503 5.729999999999998e-138   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g11356 i0 100 99.8933823529412 272 0 100 0 1 272 3925 3654 Moloney murine leukemia virus, complete genome blastn 27171 503 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;