RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA674048", tax_kingdom = "Thermoproteati" and tax_phylum = "Nitrososphaerota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 3 ✖

tax_kingdom 1

  • Thermoproteati · 3 ✖

bioproject 1

  • PRJNA674048 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21045703 21045703 PRJNA674048_P_NODE_30577_length_164_cov_1.808696_g30374_i0 PRJNA674048 30577 164 1.808696 2.96626144 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 303 3.42e-78   NTclustered gi|937513727|gb|CP012850.1| 1353260 g30374 i0 100 19.4024390243902 164 0 100 0 1 164 848071 848234 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 3182 303 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
21568154 21568154 PRJNA674048_P_NODE_27277_length_169_cov_0.866667_g27074_i0 PRJNA674048 27277 169 0.866667 1.46466723 Candidatus Nitrosocosmicus 1826864 Archaea Archaea 313 5.859999999999999e-81   NTclustered gi|937513727|gb|CP012850.1| 1353260 g27074 i0 100 85.3846153846154 169 0 100 0 1 169 847994 847826 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 14430 313 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
29229343 29229343 PRJNA674048_P_NODE_22549_length_185_cov_1.529412_g22346_i0 PRJNA674048 22549 185 1.529412 2.8294122 Candidatus Caldarchaeum sp. 2972665 Archaea Archaea 78.2 5.51e-15   NR MEM0462111.1 2972665 g22346 i0 63.9 0.989189189189189 61 21 98.9 1 183 1 450 509 MEM0462111.1 hypothetical protein [Candidatus Caldarchaeum sp.] diamond 183 78.2 1 Archaea   Thermoproteati Nitrososphaerota   Candidatus Caldarchaeales Candidatus Caldarchaeaceae Candidatus Caldarchaeum Candidatus Caldarchaeum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;