RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA674048", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA674048 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10847231 10847231 PRJNA674048_P_NODE_27929_length_168_cov_0.873950_g27726_i0 PRJNA674048 27929 168 0.87395 1.468236 Gracilinema caldarium 215591 Bacteria Bacteria 198 1.7099999999999997e-46   NTclustered gi|338832994|gb|CP002868.1| 744872 g27726 i0 88.166 1.00595238095238 169 17 100 3 1 168 3227791 3227957 Gracilinema caldarium DSM 7334 chromosome, complete genome blastn 169 198 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Breznakiellaceae Gracilinema Gracilinema caldarium
19770073 19770073 PRJNA674048_P_NODE_56_length_2754_cov_100.336414_g53_i0 PRJNA674048 56 2754 100.336414 2763.26484156 Spirochaetota bacterium 2202144 Bacteria Bacteria 145 4.59e-29   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g53 i0 81.714 6.62091503267974 175 31 6 1 1976 2149 74373 74547 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 18234 145 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
30650256 30650256 PRJNA674048_P_NODE_24913_length_176_cov_1.448819_g24710_i0 PRJNA674048 24913 176 1.448819 2.54992144 Leptospiraceae bacterium 2026757 Bacteria Bacteria 66.6 5.55e-11   NR MCB1167864.1 2026757 g24710 i0 56.9 5.94886363636364 58 25 98.9 0 176 3 240 297 MCB1167864.1 FG-GAP repeat protein [Leptospiraceae bacterium] diamond 1047 66.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
32326804 32326804 PRJNA674048_P_NODE_20419_length_195_cov_1.417808_g20216_i0 PRJNA674048 20419 195 1.417808 2.7647256 Spirochaetia bacterium 2053615 Bacteria Bacteria 55.8 4.56e-7   NR MCE9597123.1 2053615 g20216 i0 46.8 0.953846153846154 62 33 95.4 0 194 9 325 386 MCE9597123.1 VCBS repeat-containing protein [Spirochaetia bacterium] diamond 186 55.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;