RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA674048" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA674048 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3193958 3193958 PRJNA674048_P_NODE_19703_length_199_cov_1.206667_g19500_i0 PRJNA674048 19703 199 1.206667 2.40126733 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 315 1.99e-81   NTclustered gi|922689899|gb|CP012410.1| 712357 g19500 i0 95.431 350.462311557789 197 9 99 0 1 197 53415 53219 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 69742 315 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
7021710 7021710 PRJNA674048_P_NODE_22106_length_187_cov_1.507246_g21903_i0 PRJNA674048 22106 187 1.507246 2.81855002 Fusobacteria bacterium ZRK30 2970471 Bacteria Bacteria 252 1.47e-62   NTclustered gi|2284594148|gb|CP102404.1| 2970471 g21903 i0 90.909 1 187 17 100 0 1 187 550060 550246 Fusobacteria bacterium ZRK30 chromosome 1, complete sequence blastn 187 252 1 Bacteria   Fusobacteriati Fusobacteriota         Fusobacteria bacterium ZRK30
14672089 14672089 PRJNA674048_P_NODE_17552_length_212_cov_0.877301_g17349_i0 PRJNA674048 17552 212 0.877301 1.85987812 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 353 4.56e-93   NTclustered gi|922689899|gb|CP012410.1| 712357 g17349 i0 96.698 350.188679245283 212 7 100 0 1 212 52815 53026 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 74240 353 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
15945865 15945865 PRJNA674048_P_NODE_33033_length_161_cov_3.008929_g32830_i0 PRJNA674048 33033 161 3.008929 4.84437569 Leptotrichia hofstadii 157688 Bacteria Bacteria 298 1.56e-76   NTclustered gi|1708566027|dbj|AP019823.1| 157688 g32830 i0 100 333.416149068323 161 0 100 0 1 161 498367 498527 Leptotrichia hofstadii JCM16775 DNA, complete genome blastn 53680 298 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii
18495420 18495420 PRJNA674048_P_NODE_16055_length_222_cov_2.323699_g15852_i0 PRJNA674048 16055 222 2.323699 5.15861178 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 409 1.0100000000000001e-109   NTclustered gi|2704959642|gb|CP077196.1| 2663009 g15852 i0 100 486.810810810811 221 0 99 0 2 222 1672361 1672581 Fusobacterium pseudoperiodonticum strain SB039 chromosome, complete genome blastn 108072 409 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
23596030 23596030 PRJNA674048_P_NODE_33319_length_159_cov_2.363636_g33116_i0 PRJNA674048 33319 159 2.363636 3.75818124 Fusobacteria bacterium ZRK30 2970471 Bacteria Bacteria 272 9.28e-69   NTclustered gi|2284594148|gb|CP102404.1| 2970471 g33116 i0 97.484 466.081761006289 159 4 100 0 1 159 203743 203585 Fusobacteria bacterium ZRK30 chromosome 1, complete sequence blastn 74107 272 1 Bacteria   Fusobacteriati Fusobacteriota         Fusobacteria bacterium ZRK30
24118046 24118046 PRJNA674048_P_NODE_34079_length_152_cov_3.611650_g33876_i0 PRJNA674048 34079 152 3.61165 5.489708 Fusobacterium 848 Bacteria Bacteria 281 1.46e-71   NTclustered gi|2704983719|gb|CP077132.1| 851 g33876 i0 100 485.993421052632 152 0 100 0 1 152 92555 92404 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 73871 281 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;