RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA674048", tax_kingdom = "Fungi" and tax_phylum = "Cryptomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA674048 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26923623 26923623 PRJNA674048_P_NODE_32722_length_162_cov_0.920354_g32519_i0 PRJNA674048 32722 162 0.920354 1.49097348 Paramicrosporidium saccamoebae 1246581 Fungi Fungi 81.6 2.03e-16   NR PJF18459.1 1246581 g32519 i0 67.3 0.962962962962963 52 17 96.3 0 156 1 1 52 PJF18459.1 UspA domain-containing protein [Paramicrosporidium saccamoebae] diamond 156 81.6 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae
27524122 27524122 PRJNA674048_P_NODE_28743_length_167_cov_0.881356_g28540_i0 PRJNA674048 28743 167 0.881356 1.47186452 Paramicrosporidium saccamoebae 1246581 Fungi Fungi 77.8 1.04e-15   NR PJF18618.1 1246581 g28540 i0 63.6 0.988023952095808 55 20 98.8 0 166 2 52 106 PJF18618.1 hypothetical protein PSACC_01578 [Paramicrosporidium saccamoebae] diamond 165 77.8 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;