RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA674048", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA674048 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6269929 6269929 PRJNA674048_P_NODE_23645_length_181_cov_1.181818_g23442_i0 PRJNA674048 23645 181 1.181818 2.13909058 Bacteria 2 Bacteria Bacteria 261 2.35e-65   NTclustered gi|197691843|dbj|AB433121.1| 34034 g23442 i0 93.296 95.5911602209945 179 9 98 3 4 181 195 19 Uncultured delta proteobacterium gene for 16S rRNA, partial sequence, clone: IODP1319B109.23 blastn 17302 261 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
17221128 17221128 PRJNA674048_P_NODE_23374_length_182_cov_1.518797_g23171_i0 PRJNA674048 23374 182 1.518797 2.76421054 uncultured delta proteobacterium 34034 Bacteria Bacteria 289 1.08e-73   NTclustered gi|451917287|gb|KC451151.1| 34034 g23171 i0 95.109 100.89010989011 184 7 100 2 1 182 238 55 Uncultured delta proteobacterium clone RLBp1437 16S ribosomal RNA gene, partial sequence blastn 18362 289 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
31990204 31990204 PRJNA674048_P_NODE_31598_length_163_cov_0.912281_g31395_i0 PRJNA674048 31598 163 0.912281 1.48701803 Bacteria 2 Bacteria Bacteria 70.1 2.86e-12   NR PKN55436.1 2013741 g31395 i0 53.7 8.9079754601227 54 25 99.4 0 2 163 607 660 PKN55436.1 MAG: hypothetical protein CVU56_21385 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 1452 70.5 0.994326241134752 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;